Variant report

Variant	rs28758782
Chromosome Location	chr14:63481711-63481712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10132994	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10134227	0.84[EUR][1000 genomes]
rs10142341	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10142445	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10143651	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10145991	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10146138	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10149063	0.82[EUR][1000 genomes]
rs11621143	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17100629	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs28416602	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs56913206	0.81[AFR][1000 genomes]
rs59763288	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7156115	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63479400-63485200	Weak transcription	Hela-S3	cervix
2	chr14:63481000-63482000	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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