Variant report

Variant	rs28758823
Chromosome Location	chr4:60623157-60623158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10000997	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10003895	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10014559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10016946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10021212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10031691	1.00[AFR][1000 genomes]
rs17089751	1.00[AMR][1000 genomes]
rs17089821	1.00[AMR][1000 genomes]
rs2840135	1.00[AMR][1000 genomes]
rs28564619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28573076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28661979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59723353	0.97[AFR][1000 genomes]
rs73820658	1.00[AMR][1000 genomes]
rs9999335	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760852	chr4:60424576-60863454	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1014103	chr4:60577047-61162433	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv537108	chr4:60577047-61162433	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv879053	chr4:60595559-60729234	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879054	chr4:60595559-60770353	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879055	chr4:60606655-60715255	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv879056	chr4:60606655-60729234	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879057	chr4:60616622-60715255	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv879058	chr4:60616622-60751868	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60621800-60623400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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