Variant report

Variant	rs28761173
Chromosome Location	chr2:123870721-123870722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13430572	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs55967736	1.00[AFR][1000 genomes]
rs55997351	0.90[EUR][1000 genomes]
rs56218653	0.90[EUR][1000 genomes]
rs56312411	0.90[EUR][1000 genomes]
rs57164937	0.90[EUR][1000 genomes]
rs58259442	0.90[EUR][1000 genomes]
rs58628052	0.90[EUR][1000 genomes]
rs58928170	0.90[EUR][1000 genomes]
rs59347369	0.90[EUR][1000 genomes]
rs59450363	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60293854	0.90[EUR][1000 genomes]
rs60326097	0.90[EUR][1000 genomes]
rs61594613	0.90[EUR][1000 genomes]
rs73951613	0.90[EUR][1000 genomes]
rs73951614	0.90[EUR][1000 genomes]
rs73951615	0.82[EUR][1000 genomes]
rs73951616	0.90[EUR][1000 genomes]
rs73951617	0.90[EUR][1000 genomes]
rs73951619	0.90[EUR][1000 genomes]
rs73951620	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73951621	0.90[EUR][1000 genomes]
rs73951623	0.90[EUR][1000 genomes]
rs73951644	0.90[EUR][1000 genomes]
rs73951664	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492280	chr2:123447662-123973577	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2760647	chr2:123678437-124619697	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1010200	chr2:123816326-123887210	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:123870400-123870800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:123870400-123871000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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