Variant report

Variant	rs55967736
Chromosome Location	chr2:123869508-123869509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10183651	1.00[EUR][1000 genomes]
rs10197160	1.00[EUR][1000 genomes]
rs10210031	1.00[EUR][1000 genomes]
rs13384312	1.00[EUR][1000 genomes]
rs13384328	1.00[EUR][1000 genomes]
rs13388351	1.00[EUR][1000 genomes]
rs13419719	1.00[EUR][1000 genomes]
rs13430572	0.88[AFR][1000 genomes]
rs1515169	1.00[EUR][1000 genomes]
rs1515170	1.00[EUR][1000 genomes]
rs28761173	1.00[AFR][1000 genomes]
rs56721038	1.00[EUR][1000 genomes]
rs59450363	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59564966	1.00[EUR][1000 genomes]
rs61058061	1.00[EUR][1000 genomes]
rs73954405	1.00[EUR][1000 genomes]
rs73954406	1.00[EUR][1000 genomes]
rs73954407	1.00[EUR][1000 genomes]
rs73954408	1.00[EUR][1000 genomes]
rs73954409	1.00[EUR][1000 genomes]
rs73954410	1.00[EUR][1000 genomes]
rs7589207	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492280	chr2:123447662-123973577	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2760647	chr2:123678437-124619697	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1010200	chr2:123816326-123887210	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:123869400-123869800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links