Variant report

Variant	rs28763628
Chromosome Location	chr8:104119154-104119155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10505036	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10505037	0.90[ASN][1000 genomes]
rs1587275	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16870084	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16870087	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16870093	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16870094	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17201513	0.80[ASN][1000 genomes]
rs1982974	0.96[ASN][1000 genomes]
rs28445282	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28506485	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28582919	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62525330	0.80[ASN][1000 genomes]
rs62525331	0.80[ASN][1000 genomes]
rs62525335	0.96[ASN][1000 genomes]
rs62525336	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62527570	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6983249	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6983904	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7825005	0.94[ASN][1000 genomes]
rs871516	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs871517	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs872585	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs872586	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv891247	chr8:104090979-104121862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104092400-104121600	Weak transcription	Right Atrium	heart
2	chr8:104116000-104119200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:104116800-104119200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:104116800-104119600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:104116800-104119800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:104116800-104123400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:104116800-104124200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr8:104117000-104124200	Enhancers	Brain Angular Gyrus	brain
9	chr8:104117200-104119400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:104117200-104121000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:104117600-104121000	Weak transcription	HSMMtube	muscle
12	chr8:104117600-104121600	Weak transcription	Fetal Stomach	stomach
13	chr8:104117600-104123800	Enhancers	Brain Cingulate Gyrus	brain
14	chr8:104117800-104121400	Weak transcription	Adipose Nuclei	Adipose
15	chr8:104117800-104121400	Weak transcription	HSMM	muscle
16	chr8:104117800-104122200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr8:104117800-104122800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr8:104117800-104123600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:104118000-104121000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:104118000-104121400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:104118000-104121400	Weak transcription	HMEC	breast
22	chr8:104118400-104120000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:104118400-104120200	Enhancers	Brain Anterior Caudate	brain
24	chr8:104118400-104120800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr8:104118400-104123600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:104118600-104120400	Weak transcription	Brain Germinal Matrix	brain
27	chr8:104118600-104121000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:104118600-104121000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:104118600-104121000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:104118600-104121200	Enhancers	Brain Hippocampus Middle	brain
31	chr8:104118600-104122200	Weak transcription	Left Ventricle	heart
32	chr8:104118800-104119400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr8:104118800-104120400	Weak transcription	NHDF-Ad	bronchial
34	chr8:104118800-104120800	Weak transcription	Osteobl	bone
35	chr8:104119000-104119600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr8:104119000-104119600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr8:104119000-104119600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr8:104119000-104120000	Weak transcription	Brain Substantia Nigra	brain
39	chr8:104119000-104120400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr8:104119000-104120800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr8:104119000-104121000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr8:104119000-104121000	Weak transcription	NH-A	brain
43	chr8:104119000-104121000	Weak transcription	NHLF	lung
44	chr8:104119000-104121600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr8:104119000-104127800	Weak transcription	H1 Cell Line	embryonic stem cell

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