Variant report
| Variant | rs62525331 |
|---|---|
| Chromosome Location | chr8:104100919-104100920 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10505036 | 0.83[ASN][1000 genomes] |
| rs10505037 | 0.83[AFR][1000 genomes] |
| rs1587275 | 0.82[ASN][1000 genomes] |
| rs16870084 | 0.81[ASN][1000 genomes] |
| rs16870087 | 0.82[ASN][1000 genomes] |
| rs16870093 | 0.83[ASN][1000 genomes] |
| rs16870094 | 0.83[ASN][1000 genomes] |
| rs17201317 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17201443 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17201513 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17790746 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17790955 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1982974 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs28445282 | 0.83[ASN][1000 genomes] |
| rs28506485 | 0.83[ASN][1000 genomes] |
| rs28582919 | 0.83[ASN][1000 genomes] |
| rs28763628 | 0.80[ASN][1000 genomes] |
| rs62525330 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62525335 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6983249 | 0.83[ASN][1000 genomes] |
| rs6983904 | 0.83[ASN][1000 genomes] |
| rs7825005 | 0.81[ASN][1000 genomes] |
| rs871516 | 0.81[ASN][1000 genomes] |
| rs871517 | 0.81[ASN][1000 genomes] |
| rs872585 | 0.81[ASN][1000 genomes] |
| rs872586 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831413 | chr8:104085141-104269789 | Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv891247 | chr8:104090979-104121862 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv521033 | chr8:104093359-104110575 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv429931 | chr8:104097396-104878014 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 82 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:104092400-104121600 | Weak transcription | Right Atrium | heart |
