Variant report

Variant	rs28776340
Chromosome Location	chr4:106802017-106802018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10004066	1.00[ASN][1000 genomes]
rs12498697	1.00[ASN][1000 genomes]
rs12500271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12502682	1.00[ASN][1000 genomes]
rs12503020	1.00[ASN][1000 genomes]
rs2112052	1.00[ASN][1000 genomes]
rs28394843	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28664632	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28712617	1.00[ASN][1000 genomes]
rs28783387	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28804192	1.00[ASN][1000 genomes]
rs71599072	1.00[ASN][1000 genomes]
rs9992325	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106792200-106815800	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links