Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10004066	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10016369	1.00[ASN][1000 genomes]
rs10034218	1.00[ASN][1000 genomes]
rs12498697	1.00[ASN][1000 genomes]
rs12500271	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12502682	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12503020	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2112052	1.00[ASN][1000 genomes]
rs28437813	1.00[ASN][1000 genomes]
rs28579777	1.00[ASN][1000 genomes]
rs28607458	1.00[ASN][1000 genomes]
rs28664632	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28712617	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28776340	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28783387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28804192	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71599072	1.00[ASN][1000 genomes]
rs9884977	1.00[ASN][1000 genomes]
rs9992325	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9999670	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000947	chr4:106651153-106701679	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106634000-106693200	Weak transcription	K562	blood
2	chr4:106659400-106686400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:106659600-106691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:106661400-106686600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:106661400-106686600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:106661600-106696800	Weak transcription	Fetal Intestine Small	intestine
7	chr4:106663800-106688600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:106673200-106686600	Weak transcription	GM12878-XiMat	blood
9	chr4:106682000-106687200	Weak transcription	NH-A	brain

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