Variant report

Variant	rs28607458
Chromosome Location	chr4:106565481-106565482
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10004066	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10016369	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033909	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10034218	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498697	1.00[ASN][1000 genomes]
rs12502682	1.00[ASN][1000 genomes]
rs12503020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2112052	1.00[ASN][1000 genomes]
rs28394843	1.00[ASN][1000 genomes]
rs28437813	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579777	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28664632	1.00[ASN][1000 genomes]
rs28712617	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28783387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28804192	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71599072	1.00[ASN][1000 genomes]
rs9884977	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992325	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999670	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106545200-106577800	Weak transcription	Pancreas	Pancrea
2	chr4:106559200-106577800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:106559400-106576600	Weak transcription	Fetal Intestine Large	intestine
4	chr4:106559400-106580000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:106559400-106580200	Weak transcription	Fetal Intestine Small	intestine
6	chr4:106559400-106602800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:106560000-106565600	Weak transcription	Fetal Lung	lung
8	chr4:106565200-106565800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr4:106565200-106565800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:106565200-106566000	Enhancers	NHEK	skin
11	chr4:106565400-106565600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:106565400-106565800	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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