Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106524640..106526715-chr4:106568646..106571321,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10004066	1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10016369	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033909	1.00[EUR][1000 genomes]
rs12498697	1.00[ASN][1000 genomes]
rs12500271	1.00[ASN][1000 genomes]
rs12502682	1.00[ASN][1000 genomes]
rs12503020	1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2112052	1.00[ASN][1000 genomes]
rs28394843	1.00[ASN][1000 genomes]
rs28437813	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579777	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28607458	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28664632	1.00[ASN][1000 genomes]
rs28712617	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28783387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28804192	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71599072	1.00[ASN][1000 genomes]
rs9884977	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992325	1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999670	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106545200-106577800	Weak transcription	Pancreas	Pancrea
2	chr4:106559200-106577800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:106559400-106576600	Weak transcription	Fetal Intestine Large	intestine
4	chr4:106559400-106580000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:106559400-106580200	Weak transcription	Fetal Intestine Small	intestine
6	chr4:106559400-106602800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:106565800-106573200	Weak transcription	Fetal Lung	lung
8	chr4:106567200-106570800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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