Variant report

Variant	rs2877670
Chromosome Location	chr14:70798184-70798185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr14:70798172-70798190	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
COX16	TF binding region

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10130596	0.97[ASN][1000 genomes]
rs10132815	0.95[ASN][1000 genomes]
rs10134376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10137455	0.97[ASN][1000 genomes]
rs10139233	0.94[ASN][1000 genomes]
rs10140161	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10140263	0.94[ASN][1000 genomes]
rs10140916	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10140938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10141034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10142875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10146506	0.94[ASN][1000 genomes]
rs10146573	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10146684	0.94[ASN][1000 genomes]
rs10148810	0.94[ASN][1000 genomes]
rs10149724	0.89[ASN][1000 genomes]
rs10150618	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10873232	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs11158856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11620731	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11627279	0.85[ASN][1000 genomes]
rs12164868	0.89[ASN][1000 genomes]
rs12431557	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12433437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12433778	0.88[EUR][1000 genomes]
rs12434413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12886764	0.97[ASN][1000 genomes]
rs12889915	0.97[ASN][1000 genomes]
rs17475866	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17476211	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2275297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2275298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2332278	0.86[CHB][hapmap]
rs2332279	0.86[CHB][hapmap]
rs2332363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2332364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2332366	0.87[ASN][1000 genomes]
rs2332368	0.94[ASN][1000 genomes]
rs2332369	0.94[ASN][1000 genomes]
rs2332370	0.94[ASN][1000 genomes]
rs2332371	0.94[ASN][1000 genomes]
rs2332374	0.94[ASN][1000 genomes]
rs2332375	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2332416	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332419	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2332420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2332422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877656	0.97[ASN][1000 genomes]
rs2877658	0.97[ASN][1000 genomes]
rs2877659	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2877660	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3784155	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs4600398	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4749	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4899344	0.97[ASN][1000 genomes]
rs4899345	0.94[ASN][1000 genomes]
rs4902814	0.89[ASN][1000 genomes]
rs6420899	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6573948	0.97[ASN][1000 genomes]
rs6573950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6573951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6573952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6573953	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6573954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6573956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6573957	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6573958	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6573959	0.92[ASN][1000 genomes]
rs6573960	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7144850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[ASN][1000 genomes]
rs7145450	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7146414	0.94[ASN][1000 genomes]
rs7146493	0.94[ASN][1000 genomes]
rs7146553	0.94[ASN][1000 genomes]
rs7147906	0.94[ASN][1000 genomes]
rs7148114	0.94[ASN][1000 genomes]
rs7148889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7150558	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7152300	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7152584	0.94[ASN][1000 genomes]
rs7154657	0.97[ASN][1000 genomes]
rs7155162	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7155332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7155564	0.97[ASN][1000 genomes]
rs7155763	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7155967	0.97[ASN][1000 genomes]
rs7157399	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7157430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7158117	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7158315	0.94[ASN][1000 genomes]
rs7159039	0.94[ASN][1000 genomes]
rs7159747	0.94[ASN][1000 genomes]
rs7160880	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005386	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8006423	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009793	0.92[ASN][1000 genomes]
rs8011014	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8011156	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013862	0.97[ASN][1000 genomes]
rs8017274	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs8021610	0.94[ASN][1000 genomes]
rs8022128	0.97[ASN][1000 genomes]
rs8022288	0.97[ASN][1000 genomes]
rs8022315	0.94[ASN][1000 genomes]
rs9323535	0.97[ASN][1000 genomes]
rs9323537	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9788426	0.94[ASN][1000 genomes]
rs9788537	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3423875	chr14:70797749-70799547	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70783400-70799200	Weak transcription	NHEK	skin
2	chr14:70783600-70798600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:70784000-70801000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:70784200-70800600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr14:70784600-70798600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:70784800-70798800	Weak transcription	Gastric	stomach
7	chr14:70785400-70799200	Weak transcription	Stomach Mucosa	stomach
8	chr14:70785600-70799000	Weak transcription	Psoas Muscle	Psoas
9	chr14:70786000-70799200	Weak transcription	Pancreas	Pancrea
10	chr14:70788200-70813600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:70789000-70798600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:70789200-70798600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:70789400-70798600	Weak transcription	Fetal Brain Female	brain
14	chr14:70789400-70798600	Weak transcription	Fetal Stomach	stomach
15	chr14:70789400-70798600	Weak transcription	Spleen	Spleen
16	chr14:70789400-70798800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr14:70789400-70799000	Weak transcription	Right Ventricle	heart
18	chr14:70789800-70798800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:70790000-70798600	Weak transcription	Thymus	Thymus
20	chr14:70790200-70798600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr14:70790400-70799000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:70790400-70799200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr14:70790600-70798600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr14:70790600-70798800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr14:70790600-70799400	Weak transcription	Brain Anterior Caudate	brain
26	chr14:70790800-70798600	Weak transcription	Esophagus	oesophagus
27	chr14:70791000-70798800	Weak transcription	Colonic Mucosa	Colon
28	chr14:70791000-70799800	Weak transcription	Fetal Heart	heart
29	chr14:70791200-70808600	Weak transcription	HUVEC	blood vessel
30	chr14:70791400-70799000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:70791400-70799600	Weak transcription	NHLF	lung
32	chr14:70791600-70799400	Weak transcription	Fetal Brain Male	brain
33	chr14:70792000-70809800	Weak transcription	Hela-S3	cervix
34	chr14:70792200-70798600	Weak transcription	Colon Smooth Muscle	Colon
35	chr14:70792400-70798800	Weak transcription	Lung	lung
36	chr14:70792800-70798200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr14:70792800-70798600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:70792800-70798600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr14:70792800-70798600	Weak transcription	Brain Angular Gyrus	brain
40	chr14:70792800-70798600	Weak transcription	Brain Substantia Nigra	brain
41	chr14:70792800-70798800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:70792800-70798800	Weak transcription	A549	lung
43	chr14:70792800-70799400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr14:70792800-70799400	Weak transcription	Brain Hippocampus Middle	brain
45	chr14:70792800-70801000	Weak transcription	Small Intestine	intestine
46	chr14:70792800-70825200	Weak transcription	NH-A	brain
47	chr14:70793000-70798600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr14:70793000-70799400	Weak transcription	HSMMtube	muscle
49	chr14:70793200-70799000	Weak transcription	HMEC	breast
50	chr14:70793200-70799200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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