Variant report

Variant	rs7155967
Chromosome Location	chr14:70825046-70825047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr14:70824691-70825065	HepG2	liver:	n/a	chr14:70824875-70824890
2	MAFF	chr14:70824704-70825052	K562	blood:	n/a	chr14:70824874-70824892
3	MAFK	chr14:70824620-70825064	IMR90	lung:	n/a	chr14:70824875-70824890
4	MAFK	chr14:70824696-70825061	HepG2	liver:	n/a	chr14:70824875-70824890
5	MAFF	chr14:70824695-70825066	HepG2	liver:	n/a	chr14:70824874-70824892
6	MAFK	chr14:70824721-70825050	H1-hESC	embryonic stem cell:	n/a	chr14:70824875-70824890
7	MAFK	chr14:70824580-70825154	GM12878	blood:	n/a	chr14:70824875-70824890

Variant related genes	Relation type
RNU2-51P	TF binding region

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10083409	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10130596	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132815	0.92[ASN][1000 genomes]
rs10133919	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10134376	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137455	0.95[ASN][1000 genomes]
rs10139233	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10140161	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140263	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10140916	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140938	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141034	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142875	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146506	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10146573	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10146684	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10148810	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10149724	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10149895	0.88[EUR][1000 genomes]
rs10150618	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873228	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10873232	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158856	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620731	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627279	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12164868	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12431557	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433437	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12434413	0.97[ASN][1000 genomes]
rs12588332	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12886764	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12889915	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17475866	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17476211	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275297	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275298	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332283	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2332363	0.95[ASN][1000 genomes]
rs2332364	0.95[ASN][1000 genomes]
rs2332366	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2332367	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2332368	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2332369	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2332370	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2332371	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2332374	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2332375	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2332416	0.97[ASN][1000 genomes]
rs2332418	0.97[ASN][1000 genomes]
rs2332419	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332420	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332422	0.97[ASN][1000 genomes]
rs2877656	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877658	0.95[ASN][1000 genomes]
rs2877659	0.95[ASN][1000 genomes]
rs2877660	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2877670	0.97[ASN][1000 genomes]
rs35050325	0.89[EUR][1000 genomes]
rs3784155	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4048554	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4600398	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749	0.92[ASN][1000 genomes]
rs4899344	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899345	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902814	0.92[ASN][1000 genomes]
rs61977477	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6420899	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573948	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573950	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573951	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573952	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573953	0.95[ASN][1000 genomes]
rs6573954	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573956	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573957	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573958	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573959	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6573960	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7144850	0.95[ASN][1000 genomes]
rs7145450	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7146414	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7146493	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7146553	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7147906	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148114	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148889	0.95[ASN][1000 genomes]
rs7149261	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7150558	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7152300	0.90[ASN][1000 genomes]
rs7152584	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7152945	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7154657	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155162	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155332	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155564	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155763	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157399	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157430	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158117	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158315	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7159039	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7159747	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7160880	0.97[ASN][1000 genomes]
rs8005386	0.87[ASN][1000 genomes]
rs8006423	0.97[ASN][1000 genomes]
rs8009793	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8011014	0.92[ASN][1000 genomes]
rs8011156	0.97[ASN][1000 genomes]
rs8013862	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017274	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021610	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8022128	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022288	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022315	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9323535	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323537	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788426	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9788537	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70792800-70825200	Weak transcription	NH-A	brain
2	chr14:70801200-70825200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:70805000-70825200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:70806600-70825200	Weak transcription	Fetal Kidney	kidney
5	chr14:70806800-70825600	Weak transcription	Small Intestine	intestine
6	chr14:70807800-70825200	Weak transcription	A549	lung
7	chr14:70813200-70825200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr14:70813200-70825400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr14:70813400-70825800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:70813600-70825400	Weak transcription	Placenta	Placenta
11	chr14:70814800-70825200	Weak transcription	Stomach Mucosa	stomach
12	chr14:70815000-70825200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:70816200-70825200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:70817000-70825800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:70817200-70825200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr14:70817200-70825200	Weak transcription	Fetal Stomach	stomach
17	chr14:70818000-70825200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr14:70819000-70825200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:70819800-70825200	Weak transcription	Fetal Lung	lung
20	chr14:70821000-70825200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr14:70821200-70825200	Weak transcription	HSMMtube	muscle
22	chr14:70821400-70825200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr14:70821800-70825400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr14:70822400-70825400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr14:70822800-70825200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:70822800-70825400	Weak transcription	Esophagus	oesophagus
27	chr14:70823200-70825200	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr14:70823200-70825200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:70823200-70825200	Weak transcription	Brain Angular Gyrus	brain
30	chr14:70823200-70825400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr14:70823200-70825400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr14:70823200-70825400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr14:70823200-70825400	Weak transcription	Pancreas	Pancrea
34	chr14:70823400-70825200	Enhancers	Brain Hippocampus Middle	brain
35	chr14:70823400-70825200	Weak transcription	Fetal Brain Male	brain
36	chr14:70823400-70825400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr14:70823400-70825400	Weak transcription	Left Ventricle	heart
38	chr14:70823600-70825200	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr14:70823600-70825200	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr14:70823600-70825400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:70823600-70825400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr14:70823800-70825200	Genic enhancers	Primary B cells from peripheral blood	blood
43	chr14:70823800-70825200	Weak transcription	Colon Smooth Muscle	Colon
44	chr14:70823800-70825200	Weak transcription	Right Atrium	heart
45	chr14:70823800-70825400	Weak transcription	Gastric	stomach
46	chr14:70823800-70825400	Weak transcription	Lung	lung
47	chr14:70823800-70825400	Weak transcription	Spleen	Spleen
48	chr14:70824000-70825400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr14:70824000-70827200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr14:70824200-70825200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links