Variant report

Variant	rs2877740
Chromosome Location	chr14:26281590-26281591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12100857	0.86[ASN][1000 genomes]
rs17110349	0.86[ASN][1000 genomes]
rs17110357	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55784268	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61270012	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61982189	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61982215	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74041303	1.00[ASN][1000 genomes]
rs8017151	1.00[ASN][1000 genomes]
rs8018168	1.00[ASN][1000 genomes]
rs8022255	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427937	chr14:26038386-26405118	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832751	chr14:26089042-26299571	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038014	chr14:26191545-26439394	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2758350	chr14:26227880-26405118	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759975	chr14:26227880-26405118	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv564074	chr14:26277377-26284693	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
7	esv1798276	chr14:26279302-26283981	Weak transcription Enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
8	nsv564075	chr14:26279551-26291049	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	nsv564076	chr14:26280582-26284744	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
10	nsv564077	chr14:26280582-26291049	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:26261400-26296400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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