Variant report

Variant	rs55784268
Chromosome Location	chr14:26224870-26224871
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12100857	1.00[ASN][1000 genomes]
rs17110349	1.00[ASN][1000 genomes]
rs17110357	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956769	0.90[ASN][1000 genomes]
rs2877740	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61270012	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982189	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61982215	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73604283	0.90[ASN][1000 genomes]
rs73604288	0.90[ASN][1000 genomes]
rs74041303	0.86[ASN][1000 genomes]
rs8017151	0.86[ASN][1000 genomes]
rs8018168	0.86[ASN][1000 genomes]
rs8019471	0.84[ASN][1000 genomes]
rs8022255	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427937	chr14:26038386-26405118	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832751	chr14:26089042-26299571	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038014	chr14:26191545-26439394	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:26221000-26225800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:26224400-26225800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr14:26224400-26227400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:26224600-26225600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr14:26224800-26225200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:26224800-26226000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr14:26224800-26226400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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