Variant report

Variant	rs28779177
Chromosome Location	chr3:134012932-134012933
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10451902	0.92[ASN][1000 genomes]
rs12485418	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12487907	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56083127	0.81[ASN][1000 genomes]
rs58343577	0.80[ASN][1000 genomes]
rs73861361	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3439062	chr3:134010287-134013035	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134010600-134013000	Weak transcription	Dnd41	blood
2	chr3:134010600-134018200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:134011000-134013000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:134011000-134013400	Weak transcription	Small Intestine	intestine
5	chr3:134011000-134018400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:134012000-134013000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:134012000-134013000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr3:134012000-134014000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:134012000-134014200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:134012000-134014200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr3:134012200-134014000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:134012200-134014200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:134012200-134014400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr3:134012400-134014000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:134012600-134013000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:134012600-134014000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr3:134012800-134013000	Enhancers	GM12878-XiMat	blood
18	chr3:134012800-134013200	Enhancers	Primary T cells from cord blood	blood
19	chr3:134012800-134013400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:134012800-134013800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr3:134012800-134014400	Enhancers	Primary T helper cells PMA-I stimulated	--

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