Variant report

Variant	rs56083127
Chromosome Location	chr3:134018336-134018337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133954849..133956381-chr3:134017446..134019848,2	MCF-7	breast:
2	chr3:134017544..134020200-chr3:134091370..134093144,2	MCF-7	breast:
3	chr3:133930920..133932595-chr3:134018162..134020016,12	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CEP63-4	chr3:134018224-134018499	refGeneNc_1711_NR_002811

Variant related genes	Relation type
ENSG00000114019	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12487907	0.84[ASN][1000 genomes]
rs28779177	0.81[ASN][1000 genomes]
rs73861361	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134011000-134018400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:134015800-134026800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:134017800-134018600	Enhancers	Duodenum Mucosa	Duodenum
4	chr3:134018000-134018400	Enhancers	Stomach Smooth Muscle	stomach
5	chr3:134018000-134018400	Enhancers	HSMM	muscle
6	chr3:134018000-134018800	Enhancers	Stomach Mucosa	stomach
7	chr3:134018200-134018400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:134018200-134018600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:134018200-134018600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:134018200-134018600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:134018200-134018600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:134018200-134018600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:134018200-134018600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:134018200-134018600	Enhancers	Adipose Nuclei	Adipose
15	chr3:134018200-134018600	Enhancers	Brain Anterior Caudate	brain
16	chr3:134018200-134018600	Enhancers	Fetal Heart	heart
17	chr3:134018200-134018600	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr3:134018200-134018600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr3:134018200-134018600	Enhancers	A549	lung
20	chr3:134018200-134018600	Enhancers	Hela-S3	cervix
21	chr3:134018200-134018600	Flanking Active TSS	HepG2	liver
22	chr3:134018200-134019000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:134018200-134019000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr3:134018200-134019200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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