Variant report

Variant	rs28789510
Chromosome Location	chr4:172530776-172530777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10015329	1.00[EUR][1000 genomes]
rs10030271	1.00[EUR][1000 genomes]
rs10032722	1.00[EUR][1000 genomes]
rs28477723	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28593761	1.00[EUR][1000 genomes]
rs28688606	1.00[EUR][1000 genomes]
rs3857032	1.00[EUR][1000 genomes]
rs61430959	1.00[EUR][1000 genomes]
rs6553584	1.00[EUR][1000 genomes]
rs6834658	1.00[EUR][1000 genomes]
rs73867170	1.00[EUR][1000 genomes]
rs73870705	1.00[EUR][1000 genomes]
rs7661178	1.00[EUR][1000 genomes]
rs7685990	1.00[EUR][1000 genomes]
rs7686411	1.00[EUR][1000 genomes]
rs9991639	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022077	chr4:172460997-172609297	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537356	chr4:172460997-172609297	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172530600-172530800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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