Variant report
| Variant | rs2879388 |
|---|---|
| Chromosome Location | chr18:24659093-24659094 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:24654215..24656527-chr18:24658995..24661475,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1075311 | 0.94[ASN][1000 genomes] |
| rs11083193 | 0.89[ASN][1000 genomes] |
| rs1155333 | 0.82[ASN][1000 genomes] |
| rs12971155 | 0.90[ASN][1000 genomes] |
| rs1426869 | 0.83[ASN][1000 genomes] |
| rs1426872 | 0.85[ASN][1000 genomes] |
| rs1559880 | 0.94[ASN][1000 genomes] |
| rs1863630 | 0.90[ASN][1000 genomes] |
| rs2081641 | 0.92[ASN][1000 genomes] |
| rs2162412 | 0.94[ASN][1000 genomes] |
| rs2339328 | 0.90[ASN][1000 genomes] |
| rs4800789 | 0.94[ASN][1000 genomes] |
| rs4800793 | 0.90[ASN][1000 genomes] |
| rs6508468 | 0.87[ASN][1000 genomes] |
| rs7245048 | 0.89[ASN][1000 genomes] |
| rs8088410 | 0.94[ASN][1000 genomes] |
| rs8091366 | 0.94[ASN][1000 genomes] |
| rs8093343 | 0.87[ASN][1000 genomes] |
| rs8093446 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8096058 | 0.94[ASN][1000 genomes] |
| rs9646564 | 0.85[ASN][1000 genomes] |
| rs9945788 | 0.94[ASN][1000 genomes] |
| rs9949654 | 0.94[ASN][1000 genomes] |
| rs9958569 | 0.94[ASN][1000 genomes] |
| rs9961184 | 0.94[ASN][1000 genomes] |
| rs9961359 | 0.94[ASN][1000 genomes] |
| rs9963727 | 0.90[ASN][1000 genomes] |
| rs9964571 | 0.94[ASN][1000 genomes] |
| rs9965371 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9966600 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833600 | chr18:24473894-24681019 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1067103 | chr18:24524011-24760469 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv543668 | chr18:24524011-24760469 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv909473 | chr18:24655235-24792075 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:24651200-24667600 | Weak transcription | Pancreas | Pancrea |
| 2 | chr18:24656800-24661400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
