Variant report

Variant	rs8093343
Chromosome Location	chr18:24653241-24653242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1075311	0.81[ASN][1000 genomes]
rs12971155	0.81[ASN][1000 genomes]
rs1559880	0.81[ASN][1000 genomes]
rs1863630	0.81[ASN][1000 genomes]
rs2162412	0.81[ASN][1000 genomes]
rs2339328	0.81[ASN][1000 genomes]
rs2879388	0.87[ASN][1000 genomes]
rs4800789	0.81[ASN][1000 genomes]
rs4800793	0.81[ASN][1000 genomes]
rs6508468	0.85[ASN][1000 genomes]
rs8088410	0.81[ASN][1000 genomes]
rs8091366	0.81[ASN][1000 genomes]
rs8093446	0.87[ASN][1000 genomes]
rs8096058	0.81[ASN][1000 genomes]
rs9945788	0.81[ASN][1000 genomes]
rs9949654	0.81[ASN][1000 genomes]
rs9958569	0.81[ASN][1000 genomes]
rs9961184	0.81[ASN][1000 genomes]
rs9961359	0.81[ASN][1000 genomes]
rs9963727	0.81[ASN][1000 genomes]
rs9964571	0.81[ASN][1000 genomes]
rs9965371	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8093343	C18orf16	cis	brain	BrainEAC

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24645200-24656400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:24651200-24667600	Weak transcription	Pancreas	Pancrea
3	chr18:24652600-24657800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr18:24653000-24653400	Enhancers	GM12878-XiMat	blood
5	chr18:24653000-24653600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr18:24653200-24657000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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