Variant report

Variant	rs2879642
Chromosome Location	chr3:179844925-179844926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10513770	0.90[EUR][1000 genomes]
rs1522117	0.81[AMR][1000 genomes]
rs16831156	0.87[EUR][1000 genomes]
rs16831208	0.80[EUR][1000 genomes]
rs1921678	0.80[EUR][1000 genomes]
rs2049470	0.87[EUR][1000 genomes]
rs4622902	0.87[EUR][1000 genomes]
rs55817353	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57938272	0.84[AMR][1000 genomes]
rs59762096	0.90[EUR][1000 genomes]
rs6806358	0.81[AMR][1000 genomes]
rs73063314	0.90[EUR][1000 genomes]
rs73063327	0.87[EUR][1000 genomes]
rs73063328	0.85[EUR][1000 genomes]
rs73883501	1.00[AMR][1000 genomes]
rs73885417	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7618809	0.81[AMR][1000 genomes]
rs9290695	0.85[EUR][1000 genomes]
rs9827851	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179843600-179845600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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