Variant report

Variant	rs73885417
Chromosome Location	chr3:179850965-179850966
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10513770	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831156	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16831208	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1921678	0.89[EUR][1000 genomes]
rs2049470	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2879642	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4622902	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59762096	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063314	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063327	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063328	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73883501	0.82[AFR][1000 genomes]
rs7431189	0.96[AFR][1000 genomes]
rs9290695	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827851	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179847200-179853400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:179848600-179859600	Weak transcription	HMEC	breast
3	chr3:179849200-179852400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:179849200-179852800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:179849800-179852800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links