Variant report

Variant	rs28799951
Chromosome Location	chr14:64213237-64213238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64204894..64206772-chr14:64213031..64214725,2	K562	blood:
2	chr14:64207187..64210125-chr14:64211918..64214413,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10132689	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10498509	0.83[ASN][1000 genomes]
rs11158507	0.94[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17101326	0.83[ASN][1000 genomes]
rs17101328	0.83[ASN][1000 genomes]
rs28673874	0.82[ASN][1000 genomes]
rs28733391	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1037824	chr14:64119493-64254025	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64211800-64213400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr14:64211800-64215400	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:64212000-64215600	Enhancers	Primary B cells from cord blood	blood
4	chr14:64212400-64213400	Enhancers	Primary hematopoietic stem cells	blood
5	chr14:64212400-64213400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr14:64212400-64213400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr14:64212400-64213400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:64212400-64213400	Enhancers	Hela-S3	cervix
9	chr14:64212600-64213400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:64212600-64213400	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr14:64212600-64213400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:64212600-64213400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr14:64212600-64213400	Flanking Active TSS	GM12878-XiMat	blood
14	chr14:64212600-64214800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr14:64212800-64213400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr14:64212800-64213400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:64212800-64213400	Flanking Active TSS	HepG2	liver
18	chr14:64212800-64215600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr14:64213000-64220800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:64213200-64213400	Enhancers	A549	lung
21	chr14:64213200-64214200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr14:64213200-64215400	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links