Variant report

Variant	rs28733391
Chromosome Location	chr14:64107099-64107100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:64106726..64110547-chr14:64191903..64196286,9	MCF-7	breast:
2	chr14:64008001..64011840-chr14:64106623..64112419,9	MCF-7	breast:
3	chr14:64106963..64108650-chr14:64199883..64202307,2	MCF-7	breast:
4	chr14:64106473..64110986-chr14:64192827..64196811,8	MCF-7	breast:
5	chr14:64106865..64107522-chr8:6565385..6566322,2	Hela-S3	cervix:
6	chr14:64007697..64011476-chr14:64104829..64109373,5	K562	blood:
7	chr14:64008641..64011329-chr14:64106976..64109877,3	K562	blood:
8	chr14:64096620..64100440-chr14:64104972..64107420,3	K562	blood:
9	chr14:64106862..64109084-chr14:64203016..64205646,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000126821	Chromatin interaction
ENSG00000154001	Chromatin interaction
ENSG00000252749	Chromatin interaction
ENSG00000258778	Chromatin interaction
ENSG00000155189	Chromatin interaction
ENSG00000261242	Chromatin interaction
ENSG00000207172	Chromatin interaction
ENSG00000249898	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10083359	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10083535	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10131964	0.83[EUR][1000 genomes]
rs10132382	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10133598	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10133932	0.96[EUR][1000 genomes]
rs10137182	0.83[EUR][1000 genomes]
rs10137805	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10137908	0.96[EUR][1000 genomes]
rs10137933	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10142782	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10144435	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10144827	0.96[EUR][1000 genomes]
rs10148637	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10148797	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10149710	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10149737	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10149828	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10150009	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10498509	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323694	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17101315	0.83[EUR][1000 genomes]
rs17101326	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28373566	0.92[EUR][1000 genomes]
rs28401525	0.84[ASN][1000 genomes]
rs28568596	0.84[ASN][1000 genomes]
rs28575623	0.81[ASN][1000 genomes]
rs28589765	0.84[ASN][1000 genomes]
rs28590010	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28633552	0.85[ASN][1000 genomes]
rs28673874	0.89[ASN][1000 genomes]
rs28707240	0.96[EUR][1000 genomes]
rs28754898	0.84[ASN][1000 genomes]
rs28778590	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28796021	0.96[EUR][1000 genomes]
rs28799951	0.83[ASN][1000 genomes]
rs28821865	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28871365	0.84[ASN][1000 genomes]
rs4420451	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58485817	0.81[ASN][1000 genomes]
rs60269901	0.83[EUR][1000 genomes]
rs61984019	0.84[ASN][1000 genomes]
rs61984047	0.81[ASN][1000 genomes]
rs6573525	0.90[ASN][1000 genomes]
rs7148824	0.83[EUR][1000 genomes]
rs73263604	0.92[EUR][1000 genomes]
rs73263616	0.96[EUR][1000 genomes]
rs73263627	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73280610	0.84[ASN][1000 genomes]
rs73280662	0.83[EUR][1000 genomes]
rs73280667	0.83[EUR][1000 genomes]
rs73280672	0.83[EUR][1000 genomes]
rs7359072	0.92[EUR][1000 genomes]
rs7359073	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74056154	0.90[ASN][1000 genomes]
rs8009516	0.81[ASN][1000 genomes]
rs8012691	0.85[ASN][1000 genomes]
rs8022456	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64062000-64108000	Weak transcription	Spleen	Spleen
2	chr14:64062200-64107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:64066200-64107600	Weak transcription	Pancreas	Pancrea
4	chr14:64066600-64107400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:64066600-64107600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:64066600-64107800	Weak transcription	Fetal Kidney	kidney
7	chr14:64067000-64107400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr14:64067200-64107800	Weak transcription	HSMMtube	muscle
9	chr14:64068200-64107800	Weak transcription	Ovary	ovary
10	chr14:64069000-64107600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:64069200-64107600	Weak transcription	Left Ventricle	heart
12	chr14:64070800-64107600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr14:64075800-64107400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:64082000-64107200	Weak transcription	HSMM	muscle
15	chr14:64082000-64107800	Weak transcription	Brain Substantia Nigra	brain
16	chr14:64082400-64107600	Weak transcription	NHEK	skin
17	chr14:64082400-64107600	Weak transcription	Osteobl	bone
18	chr14:64082400-64107800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr14:64083200-64107200	Weak transcription	NHLF	lung
20	chr14:64084400-64107400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr14:64084600-64107600	Weak transcription	Lung	lung
22	chr14:64084600-64107800	Weak transcription	Fetal Heart	heart
23	chr14:64086200-64107400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr14:64089800-64107400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr14:64091200-64107200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:64091200-64107400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr14:64091800-64107600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr14:64092400-64107600	Weak transcription	Esophagus	oesophagus
29	chr14:64096400-64107200	Weak transcription	Primary B cells from cord blood	blood
30	chr14:64096400-64107600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:64099800-64107600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr14:64102600-64107600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr14:64102800-64107400	Weak transcription	HMEC	breast
34	chr14:64103000-64107200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:64104200-64107200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr14:64104200-64107400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:64104200-64107400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr14:64104200-64107600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr14:64104400-64107400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:64104400-64107400	Weak transcription	Fetal Intestine Small	intestine
41	chr14:64104400-64107600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr14:64104400-64107800	Weak transcription	Fetal Lung	lung
43	chr14:64104600-64107600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:64104800-64107400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:64104800-64107400	Weak transcription	Fetal Stomach	stomach
46	chr14:64105000-64107800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr14:64105200-64108000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr14:64105400-64107200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr14:64105400-64107200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr14:64105600-64107200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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