Variant report

Variant	rs10133598
Chromosome Location	chr14:64082284-64082285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10083359	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10083535	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10131964	0.83[EUR][1000 genomes]
rs10132382	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10133932	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10137182	0.83[EUR][1000 genomes]
rs10137805	1.00[EUR][1000 genomes]
rs10137908	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10137933	1.00[EUR][1000 genomes]
rs10142782	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10144435	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144827	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10148637	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10148797	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149710	1.00[EUR][1000 genomes]
rs10149737	1.00[EUR][1000 genomes]
rs10149828	1.00[EUR][1000 genomes]
rs10150009	1.00[EUR][1000 genomes]
rs10498509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11158507	1.00[JPT][hapmap]
rs12323694	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101315	0.83[EUR][1000 genomes]
rs17101326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17101328	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28373566	1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28401525	0.89[ASN][1000 genomes]
rs28568596	0.89[ASN][1000 genomes]
rs28589765	0.89[ASN][1000 genomes]
rs28590010	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28633552	0.90[ASN][1000 genomes]
rs28673874	0.84[ASN][1000 genomes]
rs28707240	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28733391	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28754898	0.89[ASN][1000 genomes]
rs28778590	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28796021	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28821865	1.00[EUR][1000 genomes]
rs28871365	0.89[ASN][1000 genomes]
rs4420451	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56898919	0.84[ASN][1000 genomes]
rs60269901	0.83[EUR][1000 genomes]
rs61984019	0.89[ASN][1000 genomes]
rs61984037	0.82[ASN][1000 genomes]
rs6573525	0.95[ASN][1000 genomes]
rs7145740	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7148824	0.83[EUR][1000 genomes]
rs73263604	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73263616	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73263627	0.96[EUR][1000 genomes]
rs73280610	0.89[ASN][1000 genomes]
rs73280662	0.83[EUR][1000 genomes]
rs73280667	0.83[EUR][1000 genomes]
rs73280672	0.83[EUR][1000 genomes]
rs7359072	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7359073	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74056154	0.95[ASN][1000 genomes]
rs8012691	0.90[ASN][1000 genomes]
rs8022456	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv528691	chr14:64068806-64098555	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64062000-64108000	Weak transcription	Spleen	Spleen
2	chr14:64062200-64082400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:64062200-64107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:64062600-64107000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr14:64062800-64105400	Weak transcription	Hela-S3	cervix
6	chr14:64063200-64092800	Weak transcription	Aorta	Aorta
7	chr14:64063400-64098600	Weak transcription	Small Intestine	intestine
8	chr14:64066200-64083800	Weak transcription	Lung	lung
9	chr14:64066200-64084200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:64066200-64086400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:64066200-64097400	Weak transcription	Gastric	stomach
12	chr14:64066200-64099400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr14:64066200-64107600	Weak transcription	Pancreas	Pancrea
14	chr14:64066400-64083200	Weak transcription	Fetal Lung	lung
15	chr14:64066400-64099400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr14:64066600-64084000	Weak transcription	Thymus	Thymus
17	chr14:64066600-64087800	Weak transcription	Colon Smooth Muscle	Colon
18	chr14:64066600-64088600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr14:64066600-64088800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr14:64066600-64092800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr14:64066600-64093600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr14:64066600-64096200	Weak transcription	K562	blood
23	chr14:64066600-64099400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr14:64066600-64107400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:64066600-64107600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr14:64066600-64107800	Weak transcription	Fetal Kidney	kidney
27	chr14:64067000-64087200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr14:64067000-64107400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr14:64067200-64087600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr14:64067200-64088200	Weak transcription	Right Ventricle	heart
31	chr14:64067200-64096000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:64067200-64107800	Weak transcription	HSMMtube	muscle
33	chr14:64067800-64100400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr14:64068200-64100800	Weak transcription	Fetal Intestine Large	intestine
35	chr14:64068200-64105600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:64068200-64107800	Weak transcription	Ovary	ovary
37	chr14:64068400-64083400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr14:64068400-64084200	Weak transcription	Fetal Muscle Leg	muscle
39	chr14:64068400-64086800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr14:64068600-64087000	Weak transcription	Adipose Nuclei	Adipose
41	chr14:64069000-64086800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr14:64069000-64098400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr14:64069000-64107600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr14:64069200-64107600	Weak transcription	Left Ventricle	heart
45	chr14:64070800-64082800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr14:64070800-64084400	Weak transcription	GM12878-XiMat	blood
47	chr14:64070800-64088200	Weak transcription	Liver	Liver
48	chr14:64070800-64107600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr14:64071000-64083800	Weak transcription	Fetal Intestine Small	intestine
50	chr14:64071000-64089200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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