Variant report

Variant	rs28633552
Chromosome Location	chr14:64060554-64060555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10083359	0.88[CHD][hapmap];0.83[GIH][hapmap]
rs10131964	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10132382	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133598	0.90[ASN][1000 genomes]
rs10133932	0.83[EUR][1000 genomes]
rs10137182	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10137908	1.00[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs10142782	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10144435	0.90[ASN][1000 genomes]
rs10144827	0.83[EUR][1000 genomes]
rs10148637	0.88[CHD][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs10148797	0.90[ASN][1000 genomes]
rs10498509	0.85[ASN][1000 genomes]
rs11158507	0.88[CHD][hapmap]
rs11847188	1.00[CEU][hapmap]
rs11847332	1.00[CEU][hapmap]
rs12323694	0.90[ASN][1000 genomes]
rs1255792	0.82[ASN][1000 genomes]
rs1262228	0.82[ASN][1000 genomes]
rs17101315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17101326	0.88[CHD][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap];0.85[ASN][1000 genomes]
rs17101328	0.85[ASN][1000 genomes]
rs2236339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28373566	1.00[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28401525	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28568596	0.90[ASN][1000 genomes]
rs28589765	0.90[ASN][1000 genomes]
rs28590010	0.80[ASN][1000 genomes]
rs28707240	0.83[EUR][1000 genomes]
rs28733391	0.85[ASN][1000 genomes]
rs28754898	0.90[ASN][1000 genomes]
rs28796021	1.00[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs28871365	0.90[ASN][1000 genomes]
rs4420451	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55659518	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56898919	0.85[ASN][1000 genomes]
rs60269901	0.97[EUR][1000 genomes]
rs60327717	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61984019	0.90[ASN][1000 genomes]
rs61984037	0.82[ASN][1000 genomes]
rs6573525	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6573526	1.00[CEU][hapmap]
rs7142943	0.87[ASN][1000 genomes]
rs7145740	1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs7148824	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7152052	1.00[CEU][hapmap]
rs7154057	1.00[CEU][hapmap]
rs7154795	1.00[CEU][hapmap]
rs7155345	1.00[CEU][hapmap]
rs7155351	1.00[CEU][hapmap]
rs7156289	0.87[ASN][1000 genomes]
rs7156393	0.87[ASN][1000 genomes]
rs7157776	1.00[CEU][hapmap]
rs73263604	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73263616	0.83[EUR][1000 genomes]
rs73263627	0.83[EUR][1000 genomes]
rs73280610	0.90[ASN][1000 genomes]
rs73280637	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73280645	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73280662	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73280667	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73280672	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7359072	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7359073	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74056152	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74056153	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74056154	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8006499	1.00[CEU][hapmap]
rs8007512	0.87[ASN][1000 genomes]
rs8012130	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8012691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012866	1.00[CEU][hapmap]
rs8018580	1.00[CEU][hapmap]
rs8020691	1.00[CEU][hapmap]
rs8020821	0.88[CHD][hapmap]
rs8022456	0.90[ASN][1000 genomes]
rs974700	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv977474	chr14:64057229-64061708	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64059000-64060600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr14:64059200-64065600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr14:64059800-64064800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:64060000-64062200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:64060400-64062200	ZNF genes & repeats	Fetal Intestine Small	intestine
6	chr14:64060400-64062400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr14:64060400-64062800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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