Variant report

Variant	rs8012866
Chromosome Location	chr14:64204020-64204021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64106862..64109084-chr14:64203016..64205646,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140006	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10137908	1.00[CEU][hapmap]
rs10498511	1.00[JPT][hapmap]
rs11158502	1.00[JPT][hapmap]
rs11158503	1.00[JPT][hapmap]
rs11158506	1.00[JPT][hapmap]
rs11845405	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11847188	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11847332	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17101315	1.00[CEU][hapmap]
rs17101346	1.00[JPT][hapmap]
rs17101348	1.00[JPT][hapmap]
rs17101371	1.00[JPT][hapmap]
rs17101374	1.00[JPT][hapmap]
rs2031940	1.00[JPT][hapmap]
rs2236339	1.00[CEU][hapmap]
rs28373566	1.00[CEU][hapmap]
rs28594107	1.00[EUR][1000 genomes]
rs28796021	1.00[CEU][hapmap]
rs3742622	1.00[JPT][hapmap]
rs55706628	1.00[ASN][1000 genomes]
rs57382236	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60622367	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60770727	1.00[EUR][1000 genomes]
rs61294226	1.00[EUR][1000 genomes]
rs6573526	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6573527	1.00[EUR][1000 genomes]
rs6573529	1.00[JPT][hapmap]
rs7141460	1.00[JPT][hapmap]
rs7148755	1.00[JPT][hapmap]
rs7149625	1.00[JPT][hapmap]
rs7152052	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7154057	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154718	1.00[JPT][hapmap]
rs7154795	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7155345	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7155351	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7156219	1.00[JPT][hapmap]
rs7156468	1.00[JPT][hapmap]
rs73263609	1.00[EUR][1000 genomes]
rs73263615	1.00[EUR][1000 genomes]
rs73263621	1.00[EUR][1000 genomes]
rs73263701	1.00[EUR][1000 genomes]
rs73265704	1.00[EUR][1000 genomes]
rs73265710	1.00[EUR][1000 genomes]
rs73265721	1.00[EUR][1000 genomes]
rs73265728	1.00[EUR][1000 genomes]
rs73265735	1.00[EUR][1000 genomes]
rs73265739	1.00[EUR][1000 genomes]
rs73267621	1.00[ASN][1000 genomes]
rs73267623	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280648	1.00[EUR][1000 genomes]
rs73280651	1.00[EUR][1000 genomes]
rs8003077	1.00[JPT][hapmap]
rs8003101	1.00[JPT][hapmap]
rs8003314	1.00[JPT][hapmap]
rs8004836	1.00[EUR][1000 genomes]
rs8006499	1.00[CEU][hapmap]
rs8010598	1.00[EUR][1000 genomes]
rs8018439	1.00[EUR][1000 genomes]
rs8018580	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8020030	1.00[EUR][1000 genomes]
rs8020691	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8020831	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1037824	chr14:64119493-64254025	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64203600-64204200	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr14:64203800-64204400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr14:64203800-64204400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr14:64203800-64204400	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr14:64203800-64204600	Enhancers	Primary T cells from cord blood	blood
6	chr14:64203800-64204800	Flanking Active TSS	GM12878-XiMat	blood
7	chr14:64203800-64205000	Enhancers	Primary B cells from peripheral blood	blood
8	chr14:64203800-64205000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:64204000-64204200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr14:64204000-64204600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr14:64204000-64204600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:64204000-64204800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr14:64204000-64204800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr14:64204000-64204800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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