Variant report

Variant	rs7154057
Chromosome Location	chr14:64201228-64201229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64106963..64108650-chr14:64199883..64202307,2	MCF-7	breast:
2	chr14:64116599..64118702-chr14:64200894..64203487,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200693	Chromatin interaction
ENSG00000140006	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10137908	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs10498511	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11158502	1.00[JPT][hapmap]
rs11158503	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11158506	1.00[JPT][hapmap]
rs11845405	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11847188	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11847332	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17101315	1.00[CEU][hapmap]
rs17101346	1.00[JPT][hapmap]
rs17101348	1.00[JPT][hapmap]
rs17101371	1.00[JPT][hapmap]
rs17101374	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2031940	1.00[JPT][hapmap]
rs2236339	1.00[CEU][hapmap]
rs28373566	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs28594107	1.00[EUR][1000 genomes]
rs28796021	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs3742622	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs55706628	1.00[ASN][1000 genomes]
rs57382236	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60622367	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60770727	1.00[EUR][1000 genomes]
rs61294226	1.00[EUR][1000 genomes]
rs6573526	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs6573527	1.00[EUR][1000 genomes]
rs6573529	1.00[JPT][hapmap]
rs7141460	1.00[JPT][hapmap]
rs7146546	1.00[MEX][hapmap]
rs7148755	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7149625	1.00[JPT][hapmap]
rs7152052	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7154718	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7154795	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7155345	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7155351	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7156219	1.00[JPT][hapmap]
rs7156468	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs73263609	1.00[EUR][1000 genomes]
rs73263615	1.00[EUR][1000 genomes]
rs73263621	1.00[EUR][1000 genomes]
rs73263701	1.00[EUR][1000 genomes]
rs73265704	1.00[EUR][1000 genomes]
rs73265710	1.00[EUR][1000 genomes]
rs73265721	1.00[EUR][1000 genomes]
rs73265728	1.00[EUR][1000 genomes]
rs73265735	1.00[EUR][1000 genomes]
rs73265739	1.00[EUR][1000 genomes]
rs73267621	1.00[ASN][1000 genomes]
rs73267623	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280648	1.00[EUR][1000 genomes]
rs73280651	1.00[EUR][1000 genomes]
rs8003077	1.00[JPT][hapmap]
rs8003101	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs8003314	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs8004836	1.00[EUR][1000 genomes]
rs8006499	1.00[CEU][hapmap]
rs8010598	1.00[EUR][1000 genomes]
rs8012866	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018439	1.00[EUR][1000 genomes]
rs8018580	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs8020030	1.00[EUR][1000 genomes]
rs8020691	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8020831	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1037824	chr14:64119493-64254025	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1044325	chr14:64142976-64201537	Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv977476	chr14:64201124-64203008	Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64196800-64203600	Weak transcription	GM12878-XiMat	blood

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