Variant report

Variant	rs6573526
Chromosome Location	chr14:64083965-64083966
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10137908	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11847188	1.00[CEU][hapmap]
rs11847332	1.00[CEU][hapmap]
rs17101315	1.00[CEU][hapmap]
rs2236339	1.00[CEU][hapmap]
rs28373566	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs28594107	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28796021	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs57382236	1.00[EUR][1000 genomes]
rs59574119	1.00[EUR][1000 genomes]
rs60622367	1.00[EUR][1000 genomes]
rs60770727	1.00[EUR][1000 genomes]
rs61294226	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7146546	0.91[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs7152052	1.00[CEU][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7154057	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7154795	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7155345	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7155351	1.00[CEU][hapmap]
rs73263609	1.00[EUR][1000 genomes]
rs73263615	1.00[EUR][1000 genomes]
rs73263621	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263701	1.00[EUR][1000 genomes]
rs73265704	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73265710	1.00[EUR][1000 genomes]
rs73265721	1.00[EUR][1000 genomes]
rs73265728	1.00[EUR][1000 genomes]
rs73265735	1.00[EUR][1000 genomes]
rs73265739	1.00[EUR][1000 genomes]
rs73267623	1.00[EUR][1000 genomes]
rs73280648	1.00[EUR][1000 genomes]
rs73280651	1.00[EUR][1000 genomes]
rs74060101	1.00[EUR][1000 genomes]
rs8004836	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8006499	1.00[CEU][hapmap]
rs8010598	1.00[EUR][1000 genomes]
rs8012866	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8018439	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018580	0.91[ASW][hapmap];1.00[CEU][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020030	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020691	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv528691	chr14:64068806-64098555	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64062000-64108000	Weak transcription	Spleen	Spleen
2	chr14:64062200-64107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:64062600-64107000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:64062800-64105400	Weak transcription	Hela-S3	cervix
5	chr14:64063200-64092800	Weak transcription	Aorta	Aorta
6	chr14:64063400-64098600	Weak transcription	Small Intestine	intestine
7	chr14:64066200-64084200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:64066200-64086400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:64066200-64097400	Weak transcription	Gastric	stomach
10	chr14:64066200-64099400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr14:64066200-64107600	Weak transcription	Pancreas	Pancrea
12	chr14:64066400-64099400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:64066600-64084000	Weak transcription	Thymus	Thymus
14	chr14:64066600-64087800	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:64066600-64088600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr14:64066600-64088800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr14:64066600-64092800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr14:64066600-64093600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:64066600-64096200	Weak transcription	K562	blood
20	chr14:64066600-64099400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr14:64066600-64107400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:64066600-64107600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:64066600-64107800	Weak transcription	Fetal Kidney	kidney
24	chr14:64067000-64087200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:64067000-64107400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr14:64067200-64087600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr14:64067200-64088200	Weak transcription	Right Ventricle	heart
28	chr14:64067200-64096000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:64067200-64107800	Weak transcription	HSMMtube	muscle
30	chr14:64067800-64100400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr14:64068200-64100800	Weak transcription	Fetal Intestine Large	intestine
32	chr14:64068200-64105600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr14:64068200-64107800	Weak transcription	Ovary	ovary
34	chr14:64068400-64084200	Weak transcription	Fetal Muscle Leg	muscle
35	chr14:64068400-64086800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:64068600-64087000	Weak transcription	Adipose Nuclei	Adipose
37	chr14:64069000-64086800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr14:64069000-64098400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr14:64069000-64107600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr14:64069200-64107600	Weak transcription	Left Ventricle	heart
41	chr14:64070800-64084400	Weak transcription	GM12878-XiMat	blood
42	chr14:64070800-64088200	Weak transcription	Liver	Liver
43	chr14:64070800-64107600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr14:64071000-64089200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr14:64072000-64100800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:64075800-64107400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr14:64078200-64085600	Weak transcription	Placenta	Placenta
48	chr14:64080000-64085400	Weak transcription	HepG2	liver
49	chr14:64080000-64087800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr14:64080000-64088200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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