Variant report

Variant	rs61294226
Chromosome Location	chr14:64107980-64107981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:64107921..64109795-chr3:185654775..185656596,2	MCF-7	breast:
2	chr14:64106726..64110547-chr14:64191903..64196286,9	MCF-7	breast:
3	chr14:64008001..64011840-chr14:64106623..64112419,9	MCF-7	breast:
4	chr14:64107754..64108531-chr3:169482408..169482909,2	Hela-S3	cervix:
5	chr14:64106963..64108650-chr14:64199883..64202307,2	MCF-7	breast:
6	chr14:64106473..64110986-chr14:64192827..64196811,8	MCF-7	breast:
7	chr14:64107471..64110502-chr14:64193160..64196090,4	K562	blood:
8	chr14:64086921..64089569-chr14:64107307..64109779,2	K562	blood:
9	chr14:64107266..64110897-chr14:64115697..64119030,4	MCF-7	breast:
10	chr14:64007697..64011476-chr14:64104829..64109373,5	K562	blood:
11	chr14:64008641..64011329-chr14:64106976..64109877,3	K562	blood:
12	chr14:64107471..64110764-chr14:64193160..64196213,5	K562	blood:
13	chr14:64106862..64109084-chr14:64203016..64205646,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000126821	Chromatin interaction
ENSG00000136527	Chromatin interaction
ENSG00000206822	Chromatin interaction
ENSG00000154001	Chromatin interaction
ENSG00000200693	Chromatin interaction
ENSG00000270141	Chromatin interaction
ENSG00000261242	Chromatin interaction
ENSG00000252749	Chromatin interaction
ENSG00000258778	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs28594107	1.00[EUR][1000 genomes]
rs57382236	1.00[EUR][1000 genomes]
rs59574119	1.00[EUR][1000 genomes]
rs60622367	1.00[EUR][1000 genomes]
rs60770727	1.00[EUR][1000 genomes]
rs6573526	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573527	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7152052	1.00[EUR][1000 genomes]
rs7154057	1.00[EUR][1000 genomes]
rs7154795	1.00[EUR][1000 genomes]
rs7155345	1.00[EUR][1000 genomes]
rs73263609	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263615	1.00[EUR][1000 genomes]
rs73263621	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263701	1.00[EUR][1000 genomes]
rs73265704	1.00[EUR][1000 genomes]
rs73265710	1.00[EUR][1000 genomes]
rs73265721	1.00[EUR][1000 genomes]
rs73265728	1.00[EUR][1000 genomes]
rs73265735	1.00[EUR][1000 genomes]
rs73265739	1.00[EUR][1000 genomes]
rs73267623	1.00[EUR][1000 genomes]
rs73280648	1.00[EUR][1000 genomes]
rs73280651	1.00[EUR][1000 genomes]
rs8004836	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010598	1.00[EUR][1000 genomes]
rs8012866	1.00[EUR][1000 genomes]
rs8018439	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018580	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020030	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020691	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64062000-64108000	Weak transcription	Spleen	Spleen
2	chr14:64105200-64108000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:64106600-64108400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:64106800-64108000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr14:64106800-64109600	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr14:64107000-64109000	Active TSS	HepG2	liver
7	chr14:64107000-64109800	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr14:64107000-64110200	Active TSS	K562	blood
9	chr14:64107200-64108600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:64107200-64109400	Active TSS	Primary T cells from cord blood	blood
11	chr14:64107200-64109400	Active TSS	Hela-S3	cervix
12	chr14:64107200-64109600	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr14:64107200-64109600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:64107200-64109600	Active TSS	GM12878-XiMat	blood
15	chr14:64107200-64109800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:64107200-64109800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:64107200-64109800	Active TSS	Fetal Brain Female	brain
18	chr14:64107200-64109800	Active TSS	HSMM	muscle
19	chr14:64107200-64110000	Active TSS	A549	lung
20	chr14:64107400-64108000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr14:64107400-64109200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:64107400-64109400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:64107400-64109400	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr14:64107400-64109400	Active TSS	Muscle Satellite Cultured Cells	--
25	chr14:64107400-64109400	Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr14:64107400-64109600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:64107400-64109600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr14:64107400-64109600	Active TSS	Fetal Intestine Small	intestine
29	chr14:64107400-64109600	Active TSS	Right Ventricle	heart
30	chr14:64107400-64109600	Active TSS	HMEC	breast
31	chr14:64107400-64109800	Active TSS	H1 Cell Line	embryonic stem cell
32	chr14:64107400-64109800	Active TSS	H9 Cell Line	embryonic stem cell
33	chr14:64107400-64109800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:64107400-64109800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:64107400-64109800	Active TSS	Primary hematopoietic stem cells short term culture	blood
36	chr14:64107400-64109800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:64107400-64109800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr14:64107400-64109800	Active TSS	Psoas Muscle	Psoas
39	chr14:64107400-64109800	Active TSS	Right Atrium	heart
40	chr14:64107400-64110200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr14:64107600-64108000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
42	chr14:64107600-64108000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr14:64107600-64108000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
44	chr14:64107600-64108000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:64107600-64108000	Active TSS	Rectal Mucosa Donor 29	rectum
46	chr14:64107600-64108000	Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr14:64107600-64108200	Flanking Active TSS	Primary B cells from cord blood	blood
48	chr14:64107600-64108200	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr14:64107600-64108400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr14:64107600-64109200	Active TSS	Primary T helper cells PMA-I stimulated	--

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