Variant report

Variant	rs11845405
Chromosome Location	chr14:64207236-64207237
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64108717..64110650-chr14:64205366..64207933,2	MCF-7	breast:
2	chr14:64193374..64195653-chr14:64205675..64207881,3	K562	blood:
3	chr14:64207187..64210125-chr14:64211918..64214413,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126821	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10498511	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11158502	1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.92[EUR][1000 genomes]
rs11158503	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11158504	0.96[EUR][1000 genomes]
rs11158506	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11844499	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11845471	1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs11845514	0.82[EUR][1000 genomes]
rs11845765	1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs11846081	0.91[EUR][1000 genomes]
rs11847188	1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs11847332	1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs11849082	0.96[EUR][1000 genomes]
rs11850853	1.00[TSI][hapmap]
rs12147926	0.87[EUR][1000 genomes]
rs17101346	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs17101348	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs17101355	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17101371	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs17101374	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2031940	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2031941	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3742622	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs4346121	1.00[EUR][1000 genomes]
rs55665448	0.91[EUR][1000 genomes]
rs55706628	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55758170	0.82[EUR][1000 genomes]
rs55763522	0.87[EUR][1000 genomes]
rs55797516	0.91[EUR][1000 genomes]
rs55874427	0.91[EUR][1000 genomes]
rs55919053	0.96[EUR][1000 genomes]
rs56015314	0.91[EUR][1000 genomes]
rs56021364	0.82[EUR][1000 genomes]
rs56051693	0.96[EUR][1000 genomes]
rs56060943	0.82[EUR][1000 genomes]
rs56094435	0.91[EUR][1000 genomes]
rs56105514	0.96[EUR][1000 genomes]
rs56113838	0.91[EUR][1000 genomes]
rs56169803	0.82[EUR][1000 genomes]
rs56247501	0.91[EUR][1000 genomes]
rs56280069	0.96[EUR][1000 genomes]
rs56301550	0.82[EUR][1000 genomes]
rs56342043	0.91[EUR][1000 genomes]
rs56388534	0.96[EUR][1000 genomes]
rs56858295	0.91[EUR][1000 genomes]
rs56973820	0.91[EUR][1000 genomes]
rs57382236	1.00[ASN][1000 genomes]
rs61692440	0.87[EUR][1000 genomes]
rs61984031	0.82[EUR][1000 genomes]
rs61984033	0.82[EUR][1000 genomes]
rs61984036	0.82[EUR][1000 genomes]
rs61984045	0.82[EUR][1000 genomes]
rs61984046	0.82[EUR][1000 genomes]
rs61984048	0.82[EUR][1000 genomes]
rs61984051	0.87[EUR][1000 genomes]
rs61984055	0.82[EUR][1000 genomes]
rs61985669	0.91[EUR][1000 genomes]
rs61985670	0.91[EUR][1000 genomes]
rs61985671	0.91[EUR][1000 genomes]
rs61985672	0.91[EUR][1000 genomes]
rs61985674	0.87[EUR][1000 genomes]
rs61985677	0.91[EUR][1000 genomes]
rs61985680	0.91[EUR][1000 genomes]
rs61985681	0.91[EUR][1000 genomes]
rs61985682	0.91[EUR][1000 genomes]
rs61985687	0.91[EUR][1000 genomes]
rs61985689	0.91[EUR][1000 genomes]
rs61985690	0.91[EUR][1000 genomes]
rs61985691	0.82[EUR][1000 genomes]
rs6573528	0.91[EUR][1000 genomes]
rs6573529	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7141460	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7142737	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7144490	1.00[CEU][hapmap]
rs7145740	1.00[CEU][hapmap]
rs7148755	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7149625	1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7154057	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7154718	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7154795	1.00[JPT][hapmap]
rs7154883	0.91[EUR][1000 genomes]
rs7155351	1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7156219	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7156468	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7157815	1.00[EUR][1000 genomes]
rs73263634	0.91[EUR][1000 genomes]
rs73263671	0.91[EUR][1000 genomes]
rs73263676	0.87[EUR][1000 genomes]
rs73265705	0.91[EUR][1000 genomes]
rs73265719	0.96[EUR][1000 genomes]
rs73265743	0.96[EUR][1000 genomes]
rs73267621	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73267644	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8003077	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8003101	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs8003314	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs8006901	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010642	0.91[EUR][1000 genomes]
rs8012866	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8013242	0.91[EUR][1000 genomes]
rs8017282	0.87[EUR][1000 genomes]
rs8017835	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs8018034	0.82[EUR][1000 genomes]
rs8018194	0.87[EUR][1000 genomes]
rs8018382	0.91[EUR][1000 genomes]
rs8018872	0.91[EUR][1000 genomes]
rs8019280	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs8020831	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020833	0.91[EUR][1000 genomes]
rs8020893	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs9671362	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1037824	chr14:64119493-64254025	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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