Variant report

Variant	rs56280069
Chromosome Location	chr14:64196337-64196338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64106473..64110986-chr14:64192827..64196811,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140006	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10498511	0.87[EUR][1000 genomes]
rs11158497	0.82[EUR][1000 genomes]
rs11158502	0.88[EUR][1000 genomes]
rs11158503	0.96[EUR][1000 genomes]
rs11158504	1.00[EUR][1000 genomes]
rs11158506	0.96[EUR][1000 genomes]
rs11844499	0.96[EUR][1000 genomes]
rs11845405	0.96[EUR][1000 genomes]
rs11845471	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11845514	0.86[EUR][1000 genomes]
rs11845765	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11846081	0.87[EUR][1000 genomes]
rs11847033	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11847188	0.87[EUR][1000 genomes]
rs11847332	0.87[EUR][1000 genomes]
rs11849082	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11850575	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11850599	0.81[EUR][1000 genomes]
rs11850853	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12147764	0.83[AMR][1000 genomes]
rs12147926	0.91[EUR][1000 genomes]
rs17101346	0.87[EUR][1000 genomes]
rs17101348	0.87[EUR][1000 genomes]
rs17101355	0.87[EUR][1000 genomes]
rs17101371	0.87[EUR][1000 genomes]
rs17101374	0.96[EUR][1000 genomes]
rs2031941	0.96[EUR][1000 genomes]
rs3742622	0.87[EUR][1000 genomes]
rs4346121	0.96[EUR][1000 genomes]
rs55665448	0.87[EUR][1000 genomes]
rs55683626	0.91[AMR][1000 genomes]
rs55706628	0.87[EUR][1000 genomes]
rs55758170	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55763522	0.91[EUR][1000 genomes]
rs55797516	0.87[EUR][1000 genomes]
rs55874427	0.87[EUR][1000 genomes]
rs55919053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56015314	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56021364	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56051693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56060943	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56094435	0.87[EUR][1000 genomes]
rs56105514	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56113838	0.87[EUR][1000 genomes]
rs56169803	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56247501	0.87[EUR][1000 genomes]
rs56301550	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56342043	0.87[EUR][1000 genomes]
rs56388534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56858295	0.87[EUR][1000 genomes]
rs56973820	0.87[EUR][1000 genomes]
rs59420981	0.82[EUR][1000 genomes]
rs61692440	0.91[EUR][1000 genomes]
rs61984009	0.83[AMR][1000 genomes]
rs61984029	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61984031	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61984033	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61984036	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61984044	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61984045	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61984046	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61984048	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61984051	0.91[EUR][1000 genomes]
rs61984055	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61985669	0.87[EUR][1000 genomes]
rs61985670	0.87[EUR][1000 genomes]
rs61985671	0.87[EUR][1000 genomes]
rs61985672	0.87[EUR][1000 genomes]
rs61985674	0.83[EUR][1000 genomes]
rs61985677	0.87[EUR][1000 genomes]
rs61985680	0.87[EUR][1000 genomes]
rs61985681	0.87[EUR][1000 genomes]
rs61985682	0.87[EUR][1000 genomes]
rs61985687	0.87[EUR][1000 genomes]
rs61985689	0.87[EUR][1000 genomes]
rs61985690	0.87[EUR][1000 genomes]
rs61985691	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6573528	0.87[EUR][1000 genomes]
rs6573529	0.87[EUR][1000 genomes]
rs7141460	0.87[EUR][1000 genomes]
rs7142737	0.87[EUR][1000 genomes]
rs7148755	0.87[EUR][1000 genomes]
rs7149625	0.87[EUR][1000 genomes]
rs7154718	0.87[EUR][1000 genomes]
rs7154883	0.87[EUR][1000 genomes]
rs7155351	0.87[EUR][1000 genomes]
rs7156219	0.96[EUR][1000 genomes]
rs7156468	0.87[EUR][1000 genomes]
rs7157815	0.96[EUR][1000 genomes]
rs73263634	0.87[EUR][1000 genomes]
rs73263671	0.87[EUR][1000 genomes]
rs73263676	0.91[EUR][1000 genomes]
rs73265705	0.87[EUR][1000 genomes]
rs73265719	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73265743	1.00[EUR][1000 genomes]
rs73267621	0.96[EUR][1000 genomes]
rs8003077	0.96[EUR][1000 genomes]
rs8003101	0.87[EUR][1000 genomes]
rs8003314	0.87[EUR][1000 genomes]
rs8006901	0.96[EUR][1000 genomes]
rs8010642	0.87[EUR][1000 genomes]
rs8013242	0.87[EUR][1000 genomes]
rs8017282	0.91[EUR][1000 genomes]
rs8017835	0.87[EUR][1000 genomes]
rs8018194	0.83[EUR][1000 genomes]
rs8018382	0.87[EUR][1000 genomes]
rs8018872	0.87[EUR][1000 genomes]
rs8019280	0.87[EUR][1000 genomes]
rs8020833	0.87[EUR][1000 genomes]
rs8020893	0.87[EUR][1000 genomes]
rs9671362	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1037824	chr14:64119493-64254025	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1044325	chr14:64142976-64201537	Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64195400-64196600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:64195600-64196600	Weak transcription	HepG2	liver
3	chr14:64195600-64197400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:64195800-64196600	Weak transcription	GM12878-XiMat	blood
5	chr14:64196200-64196400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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