Variant report

Variant	rs11847033
Chromosome Location	chr14:64046484-64046485
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:62606585..62609127-chr14:64044498..64046630,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133316	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10498511	0.87[EUR][1000 genomes]
rs11158497	1.00[EUR][1000 genomes]
rs11158504	0.82[EUR][1000 genomes]
rs11845471	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11845514	0.95[EUR][1000 genomes]
rs11845765	0.82[EUR][1000 genomes]
rs11846081	0.87[EUR][1000 genomes]
rs11847188	0.87[EUR][1000 genomes]
rs11847332	0.87[EUR][1000 genomes]
rs11849082	0.82[EUR][1000 genomes]
rs11850575	0.84[AMR][1000 genomes]
rs11850853	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12147764	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12147926	0.91[EUR][1000 genomes]
rs17101346	0.87[EUR][1000 genomes]
rs17101348	0.87[EUR][1000 genomes]
rs17101355	0.87[EUR][1000 genomes]
rs17101371	0.87[EUR][1000 genomes]
rs3742622	0.87[EUR][1000 genomes]
rs55665448	0.87[EUR][1000 genomes]
rs55683626	1.00[AMR][1000 genomes]
rs55706628	0.87[EUR][1000 genomes]
rs55758170	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55763522	0.91[EUR][1000 genomes]
rs55797516	0.87[EUR][1000 genomes]
rs55874427	0.87[EUR][1000 genomes]
rs55919053	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56015314	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56021364	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56051693	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56060943	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56094435	0.87[EUR][1000 genomes]
rs56105514	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56113838	0.87[EUR][1000 genomes]
rs56169803	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56247501	0.87[EUR][1000 genomes]
rs56280069	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56301550	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56342043	0.87[EUR][1000 genomes]
rs56388534	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56858295	0.87[EUR][1000 genomes]
rs56973820	0.87[EUR][1000 genomes]
rs59420981	1.00[EUR][1000 genomes]
rs61692440	0.91[EUR][1000 genomes]
rs61984009	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61984029	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61984031	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61984033	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61984036	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61984044	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61984045	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61984046	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61984048	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61984051	0.91[EUR][1000 genomes]
rs61984055	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61985669	0.87[EUR][1000 genomes]
rs61985670	0.87[EUR][1000 genomes]
rs61985671	0.87[EUR][1000 genomes]
rs61985672	0.87[EUR][1000 genomes]
rs61985674	0.83[EUR][1000 genomes]
rs61985677	0.87[EUR][1000 genomes]
rs61985680	0.87[EUR][1000 genomes]
rs61985681	0.87[EUR][1000 genomes]
rs61985682	0.87[EUR][1000 genomes]
rs61985687	0.87[EUR][1000 genomes]
rs61985689	0.87[EUR][1000 genomes]
rs61985690	0.87[EUR][1000 genomes]
rs61985691	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6573528	0.87[EUR][1000 genomes]
rs6573529	0.87[EUR][1000 genomes]
rs7141460	0.87[EUR][1000 genomes]
rs7142737	0.87[EUR][1000 genomes]
rs7148755	0.87[EUR][1000 genomes]
rs7149625	0.87[EUR][1000 genomes]
rs7154718	0.87[EUR][1000 genomes]
rs7154883	0.87[EUR][1000 genomes]
rs7155351	0.87[EUR][1000 genomes]
rs7156468	0.87[EUR][1000 genomes]
rs73263634	0.87[EUR][1000 genomes]
rs73263671	0.87[EUR][1000 genomes]
rs73263676	0.91[EUR][1000 genomes]
rs73265705	0.87[EUR][1000 genomes]
rs73265719	0.82[EUR][1000 genomes]
rs73265743	0.82[EUR][1000 genomes]
rs8003101	0.87[EUR][1000 genomes]
rs8003314	0.87[EUR][1000 genomes]
rs8010642	0.87[EUR][1000 genomes]
rs8013242	0.87[EUR][1000 genomes]
rs8017282	0.91[EUR][1000 genomes]
rs8017835	0.87[EUR][1000 genomes]
rs8018194	0.83[EUR][1000 genomes]
rs8018382	0.87[EUR][1000 genomes]
rs8018872	0.87[EUR][1000 genomes]
rs8019280	0.87[EUR][1000 genomes]
rs8020833	0.87[EUR][1000 genomes]
rs8020893	0.87[EUR][1000 genomes]
rs9671362	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv974442	chr14:64024425-64046914	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64045400-64050000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:64045600-64046600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:64046400-64049600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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