Variant report

Variant	rs61984036
Chromosome Location	chr14:64075331-64075332
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10498511	0.91[EUR][1000 genomes]
rs11158497	0.95[EUR][1000 genomes]
rs11158503	0.82[EUR][1000 genomes]
rs11158504	0.86[EUR][1000 genomes]
rs11158506	0.82[EUR][1000 genomes]
rs11844499	0.82[EUR][1000 genomes]
rs11845405	0.82[EUR][1000 genomes]
rs11845471	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11845514	1.00[EUR][1000 genomes]
rs11845765	0.86[EUR][1000 genomes]
rs11846081	0.91[EUR][1000 genomes]
rs11847033	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11847188	0.91[EUR][1000 genomes]
rs11847332	0.91[EUR][1000 genomes]
rs11849082	0.86[EUR][1000 genomes]
rs11850575	0.84[AMR][1000 genomes]
rs11850853	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12147764	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12147926	0.95[EUR][1000 genomes]
rs17101346	0.91[EUR][1000 genomes]
rs17101348	0.91[EUR][1000 genomes]
rs17101355	0.91[EUR][1000 genomes]
rs17101371	0.91[EUR][1000 genomes]
rs17101374	0.82[EUR][1000 genomes]
rs2031941	0.82[EUR][1000 genomes]
rs3742622	0.91[EUR][1000 genomes]
rs4346121	0.82[EUR][1000 genomes]
rs55665448	0.91[EUR][1000 genomes]
rs55683626	1.00[AMR][1000 genomes]
rs55706628	0.91[EUR][1000 genomes]
rs55758170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55763522	0.95[EUR][1000 genomes]
rs55797516	0.91[EUR][1000 genomes]
rs55874427	0.91[EUR][1000 genomes]
rs55919053	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56015314	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56021364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56051693	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56060943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56094435	0.91[EUR][1000 genomes]
rs56105514	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56113838	0.91[EUR][1000 genomes]
rs56169803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56247501	0.91[EUR][1000 genomes]
rs56280069	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56301550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56342043	0.91[EUR][1000 genomes]
rs56388534	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56858295	0.91[EUR][1000 genomes]
rs56973820	0.91[EUR][1000 genomes]
rs59420981	0.95[EUR][1000 genomes]
rs61692440	0.95[EUR][1000 genomes]
rs61984009	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61984029	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61984031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984044	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61984045	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61984046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984051	0.95[EUR][1000 genomes]
rs61984055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985669	0.91[EUR][1000 genomes]
rs61985670	0.91[EUR][1000 genomes]
rs61985671	0.91[EUR][1000 genomes]
rs61985672	0.91[EUR][1000 genomes]
rs61985674	0.87[EUR][1000 genomes]
rs61985677	0.91[EUR][1000 genomes]
rs61985680	0.91[EUR][1000 genomes]
rs61985681	0.91[EUR][1000 genomes]
rs61985682	0.91[EUR][1000 genomes]
rs61985687	0.91[EUR][1000 genomes]
rs61985689	0.91[EUR][1000 genomes]
rs61985690	0.91[EUR][1000 genomes]
rs61985691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573528	0.91[EUR][1000 genomes]
rs6573529	0.91[EUR][1000 genomes]
rs7141460	0.91[EUR][1000 genomes]
rs7142737	0.91[EUR][1000 genomes]
rs7148755	0.91[EUR][1000 genomes]
rs7149625	0.91[EUR][1000 genomes]
rs7154718	0.91[EUR][1000 genomes]
rs7154883	0.91[EUR][1000 genomes]
rs7155351	0.91[EUR][1000 genomes]
rs7156219	0.82[EUR][1000 genomes]
rs7156468	0.91[EUR][1000 genomes]
rs7157815	0.82[EUR][1000 genomes]
rs73263634	0.91[EUR][1000 genomes]
rs73263671	0.91[EUR][1000 genomes]
rs73263676	0.95[EUR][1000 genomes]
rs73265705	0.91[EUR][1000 genomes]
rs73265719	0.86[EUR][1000 genomes]
rs73265743	0.86[EUR][1000 genomes]
rs73267621	0.82[EUR][1000 genomes]
rs8003077	0.82[EUR][1000 genomes]
rs8003101	0.91[EUR][1000 genomes]
rs8003314	0.91[EUR][1000 genomes]
rs8006901	0.82[EUR][1000 genomes]
rs8010642	0.91[EUR][1000 genomes]
rs8013242	0.91[EUR][1000 genomes]
rs8017282	0.95[EUR][1000 genomes]
rs8017835	0.91[EUR][1000 genomes]
rs8018034	0.81[EUR][1000 genomes]
rs8018194	0.87[EUR][1000 genomes]
rs8018382	0.91[EUR][1000 genomes]
rs8018872	0.91[EUR][1000 genomes]
rs8019280	0.91[EUR][1000 genomes]
rs8020833	0.91[EUR][1000 genomes]
rs8020893	0.91[EUR][1000 genomes]
rs9671362	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv528691	chr14:64068806-64098555	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64061200-64081200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:64062000-64108000	Weak transcription	Spleen	Spleen
3	chr14:64062200-64077800	Weak transcription	Esophagus	oesophagus
4	chr14:64062200-64082400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:64062200-64107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:64062600-64107000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:64062800-64105400	Weak transcription	Hela-S3	cervix
8	chr14:64063200-64092800	Weak transcription	Aorta	Aorta
9	chr14:64063400-64098600	Weak transcription	Small Intestine	intestine
10	chr14:64064800-64081000	Weak transcription	NHLF	lung
11	chr14:64065800-64081000	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:64066000-64081200	Weak transcription	NHDF-Ad	bronchial
13	chr14:64066000-64081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr14:64066200-64076800	Weak transcription	Placenta	Placenta
15	chr14:64066200-64080400	Weak transcription	HUVEC	blood vessel
16	chr14:64066200-64080800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr14:64066200-64081400	Weak transcription	Brain Anterior Caudate	brain
18	chr14:64066200-64081600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr14:64066200-64081600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr14:64066200-64082000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr14:64066200-64083800	Weak transcription	Lung	lung
22	chr14:64066200-64084200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr14:64066200-64086400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:64066200-64097400	Weak transcription	Gastric	stomach
25	chr14:64066200-64099400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr14:64066200-64107600	Weak transcription	Pancreas	Pancrea
27	chr14:64066400-64077000	Weak transcription	NH-A	brain
28	chr14:64066400-64079400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr14:64066400-64079600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:64066400-64081200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:64066400-64081800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr14:64066400-64083200	Weak transcription	Fetal Lung	lung
33	chr14:64066400-64099400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr14:64066600-64077400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr14:64066600-64077600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr14:64066600-64079400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:64066600-64081000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:64066600-64081000	Weak transcription	HSMM	muscle
39	chr14:64066600-64081200	Weak transcription	Osteobl	bone
40	chr14:64066600-64081800	Weak transcription	A549	lung
41	chr14:64066600-64084000	Weak transcription	Thymus	Thymus
42	chr14:64066600-64087800	Weak transcription	Colon Smooth Muscle	Colon
43	chr14:64066600-64088600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr14:64066600-64088800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr14:64066600-64092800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr14:64066600-64093600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr14:64066600-64096200	Weak transcription	K562	blood
48	chr14:64066600-64099400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr14:64066600-64107400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr14:64066600-64107600	Weak transcription	Stomach Smooth Muscle	stomach

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