Variant report

Variant	rs73263634
Chromosome Location	chr14:64107656-64107657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:64106726..64110547-chr14:64191903..64196286,9	MCF-7	breast:
2	chr14:64008001..64011840-chr14:64106623..64112419,9	MCF-7	breast:
3	chr14:64106963..64108650-chr14:64199883..64202307,2	MCF-7	breast:
4	chr14:64106473..64110986-chr14:64192827..64196811,8	MCF-7	breast:
5	chr14:64107471..64110502-chr14:64193160..64196090,4	K562	blood:
6	chr14:64086921..64089569-chr14:64107307..64109779,2	K562	blood:
7	chr14:64107266..64110897-chr14:64115697..64119030,4	MCF-7	breast:
8	chr14:64007697..64011476-chr14:64104829..64109373,5	K562	blood:
9	chr14:64008641..64011329-chr14:64106976..64109877,3	K562	blood:
10	chr14:64107471..64110764-chr14:64193160..64196213,5	K562	blood:
11	chr14:64106862..64109084-chr14:64203016..64205646,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000200693	Chromatin interaction
ENSG00000261242	Chromatin interaction
ENSG00000258778	Chromatin interaction
ENSG00000206822	Chromatin interaction
ENSG00000126821	Chromatin interaction
ENSG00000252749	Chromatin interaction
ENSG00000154001	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10498511	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11158497	0.87[EUR][1000 genomes]
rs11158502	0.84[EUR][1000 genomes]
rs11158503	0.91[EUR][1000 genomes]
rs11158504	0.87[EUR][1000 genomes]
rs11158506	0.91[EUR][1000 genomes]
rs11844499	0.91[EUR][1000 genomes]
rs11845405	0.91[EUR][1000 genomes]
rs11845471	0.87[EUR][1000 genomes]
rs11845514	0.91[EUR][1000 genomes]
rs11845765	0.87[EUR][1000 genomes]
rs11846081	1.00[EUR][1000 genomes]
rs11847033	0.87[EUR][1000 genomes]
rs11847188	1.00[EUR][1000 genomes]
rs11847332	1.00[EUR][1000 genomes]
rs11849082	0.87[EUR][1000 genomes]
rs11850853	0.87[EUR][1000 genomes]
rs12147764	0.83[EUR][1000 genomes]
rs12147926	0.96[EUR][1000 genomes]
rs17101346	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17101348	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17101355	1.00[EUR][1000 genomes]
rs17101371	1.00[EUR][1000 genomes]
rs17101374	0.91[EUR][1000 genomes]
rs2031941	0.91[EUR][1000 genomes]
rs3742622	1.00[EUR][1000 genomes]
rs4346121	0.91[EUR][1000 genomes]
rs55665448	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55706628	1.00[EUR][1000 genomes]
rs55758170	0.91[EUR][1000 genomes]
rs55763522	0.96[EUR][1000 genomes]
rs55797516	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55874427	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55919053	0.87[EUR][1000 genomes]
rs56015314	0.82[EUR][1000 genomes]
rs56021364	0.91[EUR][1000 genomes]
rs56051693	0.87[EUR][1000 genomes]
rs56060943	0.91[EUR][1000 genomes]
rs56094435	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56105514	0.87[EUR][1000 genomes]
rs56113838	1.00[EUR][1000 genomes]
rs56169803	0.91[EUR][1000 genomes]
rs56247501	1.00[EUR][1000 genomes]
rs56280069	0.87[EUR][1000 genomes]
rs56301550	0.91[EUR][1000 genomes]
rs56342043	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56388534	0.87[EUR][1000 genomes]
rs56858295	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56973820	1.00[EUR][1000 genomes]
rs58620317	1.00[ASN][1000 genomes]
rs59420981	0.87[EUR][1000 genomes]
rs61692440	0.96[EUR][1000 genomes]
rs61984029	0.87[EUR][1000 genomes]
rs61984031	0.91[EUR][1000 genomes]
rs61984033	0.91[EUR][1000 genomes]
rs61984036	0.91[EUR][1000 genomes]
rs61984044	0.87[EUR][1000 genomes]
rs61984045	0.91[EUR][1000 genomes]
rs61984046	0.91[EUR][1000 genomes]
rs61984048	0.91[EUR][1000 genomes]
rs61984051	0.96[EUR][1000 genomes]
rs61984055	0.91[EUR][1000 genomes]
rs61985669	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985670	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985671	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985672	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985674	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61985677	1.00[EUR][1000 genomes]
rs61985680	1.00[EUR][1000 genomes]
rs61985681	1.00[EUR][1000 genomes]
rs61985682	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985687	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985689	1.00[EUR][1000 genomes]
rs61985690	1.00[EUR][1000 genomes]
rs61985691	0.91[EUR][1000 genomes]
rs6573528	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573529	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141460	1.00[EUR][1000 genomes]
rs7142737	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144490	0.85[EUR][1000 genomes]
rs7148755	1.00[EUR][1000 genomes]
rs7149625	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7154718	1.00[EUR][1000 genomes]
rs7154883	1.00[EUR][1000 genomes]
rs7155351	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7156219	0.91[EUR][1000 genomes]
rs7156468	1.00[EUR][1000 genomes]
rs7157815	0.91[EUR][1000 genomes]
rs73263671	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263676	0.96[EUR][1000 genomes]
rs73265705	1.00[EUR][1000 genomes]
rs73265719	0.87[EUR][1000 genomes]
rs73265743	0.87[EUR][1000 genomes]
rs73267621	0.91[EUR][1000 genomes]
rs8003077	0.91[EUR][1000 genomes]
rs8003101	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8003314	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8006901	0.91[EUR][1000 genomes]
rs8010642	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8013242	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8017282	0.96[EUR][1000 genomes]
rs8017835	1.00[EUR][1000 genomes]
rs8018034	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8018194	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8018382	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018872	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8019280	1.00[EUR][1000 genomes]
rs8020833	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020893	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9671362	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64062000-64108000	Weak transcription	Spleen	Spleen
2	chr14:64066600-64107800	Weak transcription	Fetal Kidney	kidney
3	chr14:64067200-64107800	Weak transcription	HSMMtube	muscle
4	chr14:64068200-64107800	Weak transcription	Ovary	ovary
5	chr14:64082000-64107800	Weak transcription	Brain Substantia Nigra	brain
6	chr14:64082400-64107800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:64084600-64107800	Weak transcription	Fetal Heart	heart
8	chr14:64104400-64107800	Weak transcription	Fetal Lung	lung
9	chr14:64105000-64107800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr14:64105200-64108000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:64105600-64107800	Enhancers	Primary hematopoietic stem cells	blood
12	chr14:64105600-64107800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr14:64106600-64108400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:64106800-64108000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr14:64106800-64109600	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr14:64107000-64107800	Weak transcription	Brain Angular Gyrus	brain
17	chr14:64107000-64109000	Active TSS	HepG2	liver
18	chr14:64107000-64109800	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr14:64107000-64110200	Active TSS	K562	blood
20	chr14:64107200-64107800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr14:64107200-64107800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr14:64107200-64107800	Enhancers	Fetal Brain Male	brain
23	chr14:64107200-64107800	Weak transcription	NHDF-Ad	bronchial
24	chr14:64107200-64108600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr14:64107200-64109400	Active TSS	Primary T cells from cord blood	blood
26	chr14:64107200-64109400	Active TSS	Hela-S3	cervix
27	chr14:64107200-64109600	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr14:64107200-64109600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:64107200-64109600	Active TSS	GM12878-XiMat	blood
30	chr14:64107200-64109800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:64107200-64109800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:64107200-64109800	Active TSS	Fetal Brain Female	brain
33	chr14:64107200-64109800	Active TSS	HSMM	muscle
34	chr14:64107200-64110000	Active TSS	A549	lung
35	chr14:64107400-64107800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr14:64107400-64107800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
37	chr14:64107400-64107800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr14:64107400-64108000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr14:64107400-64109200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr14:64107400-64109400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr14:64107400-64109400	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr14:64107400-64109400	Active TSS	Muscle Satellite Cultured Cells	--
43	chr14:64107400-64109400	Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr14:64107400-64109600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr14:64107400-64109600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr14:64107400-64109600	Active TSS	Fetal Intestine Small	intestine
47	chr14:64107400-64109600	Active TSS	Right Ventricle	heart
48	chr14:64107400-64109600	Active TSS	HMEC	breast
49	chr14:64107400-64109800	Active TSS	H1 Cell Line	embryonic stem cell
50	chr14:64107400-64109800	Active TSS	H9 Cell Line	embryonic stem cell

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