Variant report

Variant	rs8020893
Chromosome Location	chr14:64105179-64105180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64103951..64106888-chr14:64107068..64108735,2	MCF-7	breast:
2	chr14:64095176..64098171-chr14:64103660..64105431,2	MCF-7	breast:
3	chr14:64007697..64011476-chr14:64104829..64109373,5	K562	blood:
4	chr14:64096620..64100440-chr14:64104972..64107420,3	K562	blood:

Variant related genes	Relation type
ENSG00000140006	Chromatin interaction
ENSG00000207172	Chromatin interaction
ENSG00000261242	Chromatin interaction
ENSG00000154001	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10498511	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11158497	0.87[EUR][1000 genomes]
rs11158502	1.00[GIH][hapmap];0.84[EUR][1000 genomes]
rs11158503	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11158504	0.87[EUR][1000 genomes]
rs11158506	0.91[EUR][1000 genomes]
rs11844499	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11845405	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11845471	1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs11845514	0.91[EUR][1000 genomes]
rs11845765	1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs11846081	1.00[EUR][1000 genomes]
rs11847033	0.87[EUR][1000 genomes]
rs11847188	1.00[EUR][1000 genomes]
rs11847332	1.00[EUR][1000 genomes]
rs11849082	0.87[EUR][1000 genomes]
rs11850853	1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs12147764	0.83[EUR][1000 genomes]
rs12147926	0.96[EUR][1000 genomes]
rs17101346	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17101348	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17101355	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17101371	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17101374	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2031940	1.00[CEU][hapmap]
rs2031941	0.91[EUR][1000 genomes]
rs3742622	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4346121	0.91[EUR][1000 genomes]
rs55665448	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55706628	1.00[EUR][1000 genomes]
rs55758170	0.91[EUR][1000 genomes]
rs55763522	0.96[EUR][1000 genomes]
rs55797516	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55874427	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55919053	0.87[EUR][1000 genomes]
rs56015314	0.82[EUR][1000 genomes]
rs56021364	0.91[EUR][1000 genomes]
rs56051693	0.87[EUR][1000 genomes]
rs56060943	0.91[EUR][1000 genomes]
rs56094435	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56105514	0.87[EUR][1000 genomes]
rs56113838	1.00[EUR][1000 genomes]
rs56169803	0.91[EUR][1000 genomes]
rs56247501	1.00[EUR][1000 genomes]
rs56280069	0.87[EUR][1000 genomes]
rs56301550	0.91[EUR][1000 genomes]
rs56342043	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56388534	0.87[EUR][1000 genomes]
rs56858295	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56973820	1.00[EUR][1000 genomes]
rs59420981	0.87[EUR][1000 genomes]
rs61692440	0.96[EUR][1000 genomes]
rs61984029	0.87[EUR][1000 genomes]
rs61984031	0.91[EUR][1000 genomes]
rs61984033	0.91[EUR][1000 genomes]
rs61984036	0.91[EUR][1000 genomes]
rs61984044	0.87[EUR][1000 genomes]
rs61984045	0.91[EUR][1000 genomes]
rs61984046	0.91[EUR][1000 genomes]
rs61984048	0.91[EUR][1000 genomes]
rs61984051	0.96[EUR][1000 genomes]
rs61984055	0.91[EUR][1000 genomes]
rs61985669	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985670	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985671	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985672	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985674	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61985677	1.00[EUR][1000 genomes]
rs61985680	1.00[EUR][1000 genomes]
rs61985681	1.00[EUR][1000 genomes]
rs61985682	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985687	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985689	1.00[EUR][1000 genomes]
rs61985690	1.00[EUR][1000 genomes]
rs61985691	0.91[EUR][1000 genomes]
rs6573528	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573529	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141460	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7142737	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144490	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7145740	1.00[CEU][hapmap]
rs7148755	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7149625	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7154718	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7154883	1.00[EUR][1000 genomes]
rs7155351	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7156219	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7156468	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7157815	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73263634	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73263671	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263676	0.96[EUR][1000 genomes]
rs73265705	1.00[EUR][1000 genomes]
rs73265719	0.87[EUR][1000 genomes]
rs73265743	0.87[EUR][1000 genomes]
rs73267621	0.91[EUR][1000 genomes]
rs8003077	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs8003101	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8003314	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8006901	0.91[EUR][1000 genomes]
rs8010642	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8013242	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8017282	0.96[EUR][1000 genomes]
rs8017835	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8018034	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8018194	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8018382	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018872	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8019280	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8020831	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs8020833	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9671362	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64062000-64108000	Weak transcription	Spleen	Spleen
2	chr14:64062200-64107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:64062600-64107000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:64062800-64105400	Weak transcription	Hela-S3	cervix
5	chr14:64066200-64107600	Weak transcription	Pancreas	Pancrea
6	chr14:64066600-64107400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:64066600-64107600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:64066600-64107800	Weak transcription	Fetal Kidney	kidney
9	chr14:64067000-64107400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:64067200-64107800	Weak transcription	HSMMtube	muscle
11	chr14:64068200-64105600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr14:64068200-64107800	Weak transcription	Ovary	ovary
13	chr14:64069000-64107600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:64069200-64107600	Weak transcription	Left Ventricle	heart
15	chr14:64070800-64107600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr14:64075800-64107400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr14:64082000-64107200	Weak transcription	HSMM	muscle
18	chr14:64082000-64107800	Weak transcription	Brain Substantia Nigra	brain
19	chr14:64082400-64107600	Weak transcription	NHEK	skin
20	chr14:64082400-64107600	Weak transcription	Osteobl	bone
21	chr14:64082400-64107800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:64083200-64107200	Weak transcription	NHLF	lung
23	chr14:64083800-64106800	Weak transcription	HUVEC	blood vessel
24	chr14:64084400-64107400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr14:64084600-64107600	Weak transcription	Lung	lung
26	chr14:64084600-64107800	Weak transcription	Fetal Heart	heart
27	chr14:64085400-64105600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:64086200-64107400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr14:64088600-64106800	Weak transcription	Fetal Thymus	thymus
30	chr14:64088800-64105400	Weak transcription	A549	lung
31	chr14:64089800-64107400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr14:64090800-64105400	Weak transcription	Dnd41	blood
33	chr14:64091200-64105600	Weak transcription	Fetal Muscle Leg	muscle
34	chr14:64091200-64107200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr14:64091200-64107400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr14:64091800-64107600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr14:64092400-64107600	Weak transcription	Esophagus	oesophagus
38	chr14:64095600-64107000	Weak transcription	Thymus	Thymus
39	chr14:64096400-64105600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr14:64096400-64105600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr14:64096400-64107200	Weak transcription	Primary B cells from cord blood	blood
42	chr14:64096400-64107600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr14:64099200-64106600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr14:64099800-64107600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr14:64100800-64105400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr14:64101200-64105600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr14:64102200-64106600	Weak transcription	Primary B cells from peripheral blood	blood
48	chr14:64102600-64107600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:64102800-64107400	Weak transcription	HMEC	breast
50	chr14:64103000-64106800	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links