Variant report

Variant	rs1255792
Chromosome Location	chr14:64048394-64048395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10083359	0.90[CHD][hapmap]
rs10131964	0.96[ASN][1000 genomes]
rs10132382	0.82[ASN][1000 genomes]
rs10133932	0.83[ASN][1000 genomes]
rs10137182	0.96[ASN][1000 genomes]
rs10137908	1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs10144827	0.83[ASN][1000 genomes]
rs10148637	0.90[CHD][hapmap]
rs10498511	1.00[CEU][hapmap]
rs11158503	1.00[CEU][hapmap]
rs11158505	0.81[CHD][hapmap];0.86[GIH][hapmap]
rs11844499	1.00[CEU][hapmap]
rs11845405	1.00[CEU][hapmap]
rs1262228	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101315	1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17101346	1.00[CEU][hapmap]
rs17101348	1.00[CEU][hapmap]
rs17101355	1.00[CEU][hapmap]
rs17101371	1.00[CEU][hapmap]
rs17101374	1.00[CEU][hapmap]
rs2031940	1.00[CEU][hapmap]
rs2236339	1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28373566	1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs28401525	0.82[ASN][1000 genomes]
rs28568596	0.82[ASN][1000 genomes]
rs28589765	0.82[ASN][1000 genomes]
rs28633552	0.82[ASN][1000 genomes]
rs28707240	0.83[ASN][1000 genomes]
rs28754898	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28778590	0.82[ASN][1000 genomes]
rs28796021	1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs28871365	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3742622	1.00[CEU][hapmap]
rs55659518	0.96[ASN][1000 genomes]
rs60269901	0.87[ASN][1000 genomes]
rs60327717	0.96[ASN][1000 genomes]
rs61984019	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61984037	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6573529	1.00[CEU][hapmap]
rs7141460	1.00[CEU][hapmap]
rs7142737	1.00[CEU][hapmap]
rs7142943	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7144490	1.00[CEU][hapmap]
rs7145740	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7148755	1.00[CEU][hapmap]
rs7148824	0.96[ASN][1000 genomes]
rs7154718	1.00[CEU][hapmap]
rs7156219	1.00[CEU][hapmap]
rs7156289	0.96[ASN][1000 genomes]
rs7156393	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7156468	1.00[CEU][hapmap]
rs73263604	0.91[ASN][1000 genomes]
rs73263616	0.83[ASN][1000 genomes]
rs73280610	0.82[ASN][1000 genomes]
rs73280637	0.96[ASN][1000 genomes]
rs73280645	0.96[ASN][1000 genomes]
rs73280662	0.96[ASN][1000 genomes]
rs73280667	0.96[ASN][1000 genomes]
rs73280672	0.96[ASN][1000 genomes]
rs7359072	0.91[ASN][1000 genomes]
rs7359073	0.91[ASN][1000 genomes]
rs74056152	0.96[ASN][1000 genomes]
rs74056153	0.96[ASN][1000 genomes]
rs8003077	1.00[CEU][hapmap]
rs8003101	1.00[CEU][hapmap]
rs8003314	1.00[CEU][hapmap]
rs8007512	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8012130	0.96[ASN][1000 genomes]
rs8012691	0.82[ASN][1000 genomes]
rs8017835	1.00[CEU][hapmap]
rs8019280	1.00[CEU][hapmap]
rs8020821	0.90[CHD][hapmap];0.80[GIH][hapmap]
rs8020831	1.00[CEU][hapmap]
rs8020893	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64045400-64050000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:64046400-64049600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:64047400-64049400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:64047800-64050400	Enhancers	HepG2	liver
5	chr14:64048000-64048400	Weak transcription	Fetal Brain Male	brain

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