Variant report

Variant	rs10133932
Chromosome Location	chr14:64082873-64082874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr14:64082828-64083098	Hela-S3	cervix:	n/a	chr14:64082932-64082943
2	CEBPB	chr14:64082816-64083053	IMR90	lung:	n/a	chr14:64082932-64082943
3	CEBPB	chr14:64082821-64083184	MCF-7	breast:	n/a	chr14:64082932-64082943
4	CEBPB	chr14:64082838-64083012	HepG2	liver:	n/a	chr14:64082932-64082943
5	CEBPB	chr14:64082796-64083113	HepG2	liver:	n/a	chr14:64082932-64082943
6	E2F4	chr14:64082818-64083086	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr14:64082873-64083055	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr14:64082838-64083078	MCF10A-Er-Src	breast:	n/a	n/a
9	POLR2A	chr14:64082861-64082940	MCF-7	breast:	n/a	n/a
10	CEBPB	chr14:64082801-64083065	A549	lung:	n/a	chr14:64082932-64082943

Variant related genes	Relation type
RNU6-597P	TF binding region

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10083359	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10083535	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10131964	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10132382	0.83[EUR][1000 genomes]
rs10133598	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10137182	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10137805	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10137908	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137933	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10144435	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10144827	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148637	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10148797	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10149710	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10149737	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10149828	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10150009	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10162453	0.87[ASN][1000 genomes]
rs10498509	0.96[EUR][1000 genomes]
rs11158505	0.86[ASN][1000 genomes]
rs12323694	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1255792	0.83[ASN][1000 genomes]
rs1262228	0.83[ASN][1000 genomes]
rs17101315	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17101326	0.96[EUR][1000 genomes]
rs17101328	0.96[EUR][1000 genomes]
rs2236339	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28373566	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28575623	0.95[ASN][1000 genomes]
rs28590010	0.96[EUR][1000 genomes]
rs28633552	0.83[EUR][1000 genomes]
rs28707240	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28733391	0.96[EUR][1000 genomes]
rs28778590	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28796021	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28821865	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4420451	0.96[EUR][1000 genomes]
rs55659518	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58485817	0.95[ASN][1000 genomes]
rs60269901	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60327717	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61984037	0.91[ASN][1000 genomes]
rs61984047	0.95[ASN][1000 genomes]
rs61985684	0.91[ASN][1000 genomes]
rs6573525	0.83[EUR][1000 genomes]
rs7142943	0.87[ASN][1000 genomes]
rs7145740	0.91[ASN][1000 genomes]
rs7148726	0.83[ASN][1000 genomes]
rs7148824	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7156289	0.87[ASN][1000 genomes]
rs7156393	0.87[ASN][1000 genomes]
rs73263604	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73263616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73263627	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73280637	0.87[ASN][1000 genomes]
rs73280645	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73280662	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73280667	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73280672	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7359072	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7359073	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74056152	0.87[ASN][1000 genomes]
rs74056153	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74056154	0.83[EUR][1000 genomes]
rs8007512	0.87[ASN][1000 genomes]
rs8009516	0.95[ASN][1000 genomes]
rs8012130	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8012691	0.83[EUR][1000 genomes]
rs8022456	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv528691	chr14:64068806-64098555	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64062000-64108000	Weak transcription	Spleen	Spleen
2	chr14:64062200-64107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:64062600-64107000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:64062800-64105400	Weak transcription	Hela-S3	cervix
5	chr14:64063200-64092800	Weak transcription	Aorta	Aorta
6	chr14:64063400-64098600	Weak transcription	Small Intestine	intestine
7	chr14:64066200-64083800	Weak transcription	Lung	lung
8	chr14:64066200-64084200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr14:64066200-64086400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:64066200-64097400	Weak transcription	Gastric	stomach
11	chr14:64066200-64099400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr14:64066200-64107600	Weak transcription	Pancreas	Pancrea
13	chr14:64066400-64083200	Weak transcription	Fetal Lung	lung
14	chr14:64066400-64099400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:64066600-64084000	Weak transcription	Thymus	Thymus
16	chr14:64066600-64087800	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:64066600-64088600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr14:64066600-64088800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr14:64066600-64092800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr14:64066600-64093600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:64066600-64096200	Weak transcription	K562	blood
22	chr14:64066600-64099400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr14:64066600-64107400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:64066600-64107600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr14:64066600-64107800	Weak transcription	Fetal Kidney	kidney
26	chr14:64067000-64087200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr14:64067000-64107400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr14:64067200-64087600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr14:64067200-64088200	Weak transcription	Right Ventricle	heart
30	chr14:64067200-64096000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:64067200-64107800	Weak transcription	HSMMtube	muscle
32	chr14:64067800-64100400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr14:64068200-64100800	Weak transcription	Fetal Intestine Large	intestine
34	chr14:64068200-64105600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr14:64068200-64107800	Weak transcription	Ovary	ovary
36	chr14:64068400-64083400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:64068400-64084200	Weak transcription	Fetal Muscle Leg	muscle
38	chr14:64068400-64086800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr14:64068600-64087000	Weak transcription	Adipose Nuclei	Adipose
40	chr14:64069000-64086800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr14:64069000-64098400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr14:64069000-64107600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr14:64069200-64107600	Weak transcription	Left Ventricle	heart
44	chr14:64070800-64084400	Weak transcription	GM12878-XiMat	blood
45	chr14:64070800-64088200	Weak transcription	Liver	Liver
46	chr14:64070800-64107600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr14:64071000-64083800	Weak transcription	Fetal Intestine Small	intestine
48	chr14:64071000-64089200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr14:64072000-64100800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr14:64075800-64107400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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