Variant report

Variant	rs1262228
Chromosome Location	chr14:64041315-64041316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10131964	0.96[ASN][1000 genomes]
rs10132382	0.82[ASN][1000 genomes]
rs10133932	0.83[ASN][1000 genomes]
rs10137182	0.96[ASN][1000 genomes]
rs10137908	0.83[ASN][1000 genomes]
rs10144827	0.83[ASN][1000 genomes]
rs1255792	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101315	0.96[ASN][1000 genomes]
rs2236339	0.96[ASN][1000 genomes]
rs28373566	0.91[ASN][1000 genomes]
rs28401525	0.82[ASN][1000 genomes]
rs28568596	0.82[ASN][1000 genomes]
rs28589765	0.82[ASN][1000 genomes]
rs28633552	0.82[ASN][1000 genomes]
rs28707240	0.83[ASN][1000 genomes]
rs28754898	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28778590	0.82[ASN][1000 genomes]
rs28796021	0.83[ASN][1000 genomes]
rs28871365	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55659518	0.96[ASN][1000 genomes]
rs60269901	0.87[ASN][1000 genomes]
rs60327717	0.96[ASN][1000 genomes]
rs61984019	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61984037	0.91[ASN][1000 genomes]
rs7142943	0.96[ASN][1000 genomes]
rs7145740	0.91[ASN][1000 genomes]
rs7148824	0.96[ASN][1000 genomes]
rs7156289	0.96[ASN][1000 genomes]
rs7156393	0.96[ASN][1000 genomes]
rs73263604	0.91[ASN][1000 genomes]
rs73263616	0.83[ASN][1000 genomes]
rs73280610	0.82[ASN][1000 genomes]
rs73280637	0.96[ASN][1000 genomes]
rs73280645	0.96[ASN][1000 genomes]
rs73280662	0.96[ASN][1000 genomes]
rs73280667	0.96[ASN][1000 genomes]
rs73280672	0.96[ASN][1000 genomes]
rs7359072	0.91[ASN][1000 genomes]
rs7359073	0.91[ASN][1000 genomes]
rs74056152	0.96[ASN][1000 genomes]
rs74056153	0.96[ASN][1000 genomes]
rs8007512	0.96[ASN][1000 genomes]
rs8012130	0.96[ASN][1000 genomes]
rs8012691	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv974442	chr14:64024425-64046914	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64040600-64045000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:64040600-64045000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:64040600-64045000	Weak transcription	NHEK	skin

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