Variant report

Variant	rs55659518
Chromosome Location	chr14:64059755-64059756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10083359	0.83[ASN][1000 genomes]
rs10083535	0.83[ASN][1000 genomes]
rs10131964	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132382	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10133932	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10137182	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137805	0.83[ASN][1000 genomes]
rs10137908	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10137933	0.83[ASN][1000 genomes]
rs10142782	0.87[EUR][1000 genomes]
rs10144827	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10148637	0.83[ASN][1000 genomes]
rs10149710	0.83[ASN][1000 genomes]
rs10149737	0.83[ASN][1000 genomes]
rs10149828	0.83[ASN][1000 genomes]
rs10150009	0.83[ASN][1000 genomes]
rs1255792	0.96[ASN][1000 genomes]
rs1262228	0.96[ASN][1000 genomes]
rs17101315	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28373566	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28575623	0.83[ASN][1000 genomes]
rs28633552	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28707240	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28778590	0.87[ASN][1000 genomes]
rs28796021	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28821865	0.83[ASN][1000 genomes]
rs4420451	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58485817	0.83[ASN][1000 genomes]
rs60269901	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60327717	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61984037	0.96[ASN][1000 genomes]
rs61984047	0.83[ASN][1000 genomes]
rs6573525	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7142943	1.00[ASN][1000 genomes]
rs7145740	0.96[ASN][1000 genomes]
rs7148824	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156289	1.00[ASN][1000 genomes]
rs7156393	1.00[ASN][1000 genomes]
rs73263604	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73263616	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73263627	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73280637	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280662	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280667	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280672	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359072	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7359073	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74056152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056153	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056154	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8007512	1.00[ASN][1000 genomes]
rs8009516	0.83[ASN][1000 genomes]
rs8012130	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012691	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv977474	chr14:64057229-64061708	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64054600-64060000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:64059000-64060600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:64059200-64065600	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links