Variant report

Variant	rs10137182
Chromosome Location	chr14:64055410-64055411
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10083359	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10083535	0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10131964	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132382	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10133598	0.83[EUR][1000 genomes]
rs10133932	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10137805	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10137908	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10137933	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10142782	0.90[EUR][1000 genomes]
rs10144435	0.83[EUR][1000 genomes]
rs10144827	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10148637	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10148797	0.83[EUR][1000 genomes]
rs10149710	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10149737	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10149828	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10150009	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10162453	0.82[JPT][hapmap]
rs10498509	0.83[EUR][1000 genomes]
rs11847188	1.00[CEU][hapmap]
rs11847332	1.00[CEU][hapmap]
rs12323694	0.83[EUR][1000 genomes]
rs1255792	0.96[ASN][1000 genomes]
rs1262228	0.96[ASN][1000 genomes]
rs17101144	1.00[CEU][hapmap]
rs17101315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101326	0.83[EUR][1000 genomes]
rs17101328	0.83[EUR][1000 genomes]
rs2236339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28373566	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28575623	0.83[ASN][1000 genomes]
rs28590010	0.83[EUR][1000 genomes]
rs28633552	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28707240	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28733391	0.83[EUR][1000 genomes]
rs28778590	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28796021	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28821865	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4420451	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55659518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58485817	0.83[ASN][1000 genomes]
rs60269901	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60327717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61984037	0.96[ASN][1000 genomes]
rs61984047	0.83[ASN][1000 genomes]
rs6573525	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6573526	1.00[CEU][hapmap]
rs7142943	1.00[ASN][1000 genomes]
rs7145740	0.96[ASN][1000 genomes]
rs7148824	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152052	1.00[CEU][hapmap]
rs7154057	1.00[CEU][hapmap]
rs7154795	1.00[CEU][hapmap]
rs7155345	1.00[CEU][hapmap]
rs7155351	1.00[CEU][hapmap]
rs7156289	1.00[ASN][1000 genomes]
rs7156393	1.00[ASN][1000 genomes]
rs7157776	1.00[CEU][hapmap]
rs73263604	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73263616	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73263627	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73280637	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280645	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280662	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280667	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280672	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359072	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7359073	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74056152	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056153	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056154	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8006499	1.00[CEU][hapmap]
rs8007512	1.00[ASN][1000 genomes]
rs8009516	0.83[ASN][1000 genomes]
rs8012130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012691	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8012866	1.00[CEU][hapmap]
rs8018580	1.00[CEU][hapmap]
rs8020691	1.00[CEU][hapmap]
rs8022456	0.83[EUR][1000 genomes]
rs974700	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64054600-64060000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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