Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:62606585..62609127-chr14:64044498..64046630,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133316	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10132382	0.90[ASN][1000 genomes]
rs10133598	0.89[ASN][1000 genomes]
rs10142782	0.86[ASN][1000 genomes]
rs10144435	0.89[ASN][1000 genomes]
rs10148797	0.89[ASN][1000 genomes]
rs10498509	0.84[ASN][1000 genomes]
rs12323694	0.89[ASN][1000 genomes]
rs1255792	0.82[ASN][1000 genomes]
rs1262228	0.82[ASN][1000 genomes]
rs17101326	0.84[ASN][1000 genomes]
rs17101328	0.84[ASN][1000 genomes]
rs28401525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28568596	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28633552	0.90[ASN][1000 genomes]
rs28733391	0.84[ASN][1000 genomes]
rs28754898	1.00[ASN][1000 genomes]
rs28871365	1.00[ASN][1000 genomes]
rs4420451	0.85[ASN][1000 genomes]
rs56898919	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61984019	1.00[ASN][1000 genomes]
rs6573525	0.95[ASN][1000 genomes]
rs73280610	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056154	0.95[ASN][1000 genomes]
rs8012691	0.90[ASN][1000 genomes]
rs8022456	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv974442	chr14:64024425-64046914	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64045400-64050000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:64045600-64046600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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