Variant report

Variant	rs2880593
Chromosome Location	chr6:69863675-69863676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1008757	1.00[ASN][1000 genomes]
rs1008758	1.00[ASN][1000 genomes]
rs10485254	1.00[ASN][1000 genomes]
rs1083693	1.00[ASN][1000 genomes]
rs1321977	1.00[ASN][1000 genomes]
rs1321978	1.00[ASN][1000 genomes]
rs1512229	1.00[ASN][1000 genomes]
rs1512230	1.00[ASN][1000 genomes]
rs1512232	1.00[ASN][1000 genomes]
rs1606292	1.00[ASN][1000 genomes]
rs16900526	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900585	1.00[ASN][1000 genomes]
rs16900588	1.00[ASN][1000 genomes]
rs16900597	1.00[ASN][1000 genomes]
rs1849305	1.00[ASN][1000 genomes]
rs1877427	1.00[ASN][1000 genomes]
rs1983912	1.00[ASN][1000 genomes]
rs2089902	1.00[ASN][1000 genomes]
rs2175577	1.00[ASN][1000 genomes]
rs2880651	1.00[ASN][1000 genomes]
rs314215	1.00[ASN][1000 genomes]
rs41421345	1.00[ASN][1000 genomes]
rs55727434	1.00[ASN][1000 genomes]
rs55776408	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55891245	1.00[ASN][1000 genomes]
rs55946025	1.00[ASN][1000 genomes]
rs56117881	1.00[ASN][1000 genomes]
rs57044772	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57453804	1.00[ASN][1000 genomes]
rs58397955	1.00[ASN][1000 genomes]
rs58658850	1.00[ASN][1000 genomes]
rs58928253	1.00[ASN][1000 genomes]
rs60158977	1.00[ASN][1000 genomes]
rs60611946	1.00[ASN][1000 genomes]
rs60652639	1.00[ASN][1000 genomes]
rs61181148	1.00[ASN][1000 genomes]
rs61412028	1.00[ASN][1000 genomes]
rs61503537	1.00[ASN][1000 genomes]
rs61648927	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62406782	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62406785	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62406794	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62406798	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62406800	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62406801	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62406802	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62406803	1.00[ASN][1000 genomes]
rs62406804	1.00[ASN][1000 genomes]
rs62406806	1.00[ASN][1000 genomes]
rs62406807	1.00[ASN][1000 genomes]
rs62406808	1.00[ASN][1000 genomes]
rs62406812	1.00[ASN][1000 genomes]
rs62406813	1.00[ASN][1000 genomes]
rs62406814	1.00[ASN][1000 genomes]
rs62406817	1.00[ASN][1000 genomes]
rs62406824	1.00[ASN][1000 genomes]
rs62406825	1.00[ASN][1000 genomes]
rs62406834	1.00[ASN][1000 genomes]
rs62406836	1.00[ASN][1000 genomes]
rs62406837	1.00[ASN][1000 genomes]
rs62406838	1.00[ASN][1000 genomes]
rs62406842	1.00[ASN][1000 genomes]
rs62406843	1.00[ASN][1000 genomes]
rs62406845	1.00[ASN][1000 genomes]
rs62406849	1.00[ASN][1000 genomes]
rs62406850	1.00[ASN][1000 genomes]
rs62406851	1.00[ASN][1000 genomes]
rs62406854	1.00[ASN][1000 genomes]
rs62406855	1.00[ASN][1000 genomes]
rs62406858	1.00[ASN][1000 genomes]
rs62408263	1.00[ASN][1000 genomes]
rs62408270	1.00[ASN][1000 genomes]
rs6908597	1.00[ASN][1000 genomes]
rs6919356	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6922214	1.00[ASN][1000 genomes]
rs6926403	1.00[ASN][1000 genomes]
rs6934160	1.00[ASN][1000 genomes]
rs73745969	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73745978	1.00[ASN][1000 genomes]
rs73745979	1.00[ASN][1000 genomes]
rs73745984	1.00[ASN][1000 genomes]
rs73745989	1.00[ASN][1000 genomes]
rs73745990	1.00[ASN][1000 genomes]
rs7741707	1.00[ASN][1000 genomes]
rs7746527	1.00[ASN][1000 genomes]
rs7749628	1.00[ASN][1000 genomes]
rs7751072	1.00[ASN][1000 genomes]
rs7758774	1.00[ASN][1000 genomes]
rs7765882	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7766018	1.00[ASN][1000 genomes]
rs7770340	1.00[ASN][1000 genomes]
rs7773252	1.00[ASN][1000 genomes]
rs779450	1.00[ASN][1000 genomes]
rs9689572	1.00[ASN][1000 genomes]
rs998370	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69856400-69874000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:69860800-69876200	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links