Variant report

Variant	rs28806495
Chromosome Location	chr8:125901093-125901094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125900915..125903416-chr8:125906634..125910674,4	K562	blood:
2	chr8:125900299..125904105-chr8:125905303..125908707,4	MCF-7	breast:
3	chr8:125604962..125605859-chr8:125900709..125901612,4	MCF-7	breast:
4	chr8:125900667..125902302-chr8:125902732..125904411,2	MCF-7	breast:
5	chr8:125899525..125901305-chr8:125983992..125985873,2	MCF-7	breast:
6	chr8:125882753..125883255-chr8:125901004..125901579,2	MCF-7	breast:
7	chr8:125550619..125552268-chr8:125900750..125903343,2	MCF-7	breast:
8	chr8:125900652..125901659-chr8:125936406..125937477,4	MCF-7	breast:
9	chr8:125900749..125901481-chr8:125965624..125966220,2	MCF-7	breast:
10	chr8:125893623..125896589-chr8:125899803..125902568,2	MCF-7	breast:
11	chr8:125545642..125547249-chr8:125900302..125903286,2	MCF-7	breast:
12	chr8:125900994..125902188-chr8:125936157..125937195,3	MCF-7	breast:
13	chr8:125863185..125866167-chr8:125900364..125902687,2	K562	blood:
14	chr8:125825941..125830302-chr8:125896612..125901724,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255491	Chromatin interaction
ENSG00000180938	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000147684	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10109611	1.00[EUR][1000 genomes]
rs12549398	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12549495	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13282814	1.00[EUR][1000 genomes]
rs28416206	1.00[EUR][1000 genomes]
rs28513518	1.00[EUR][1000 genomes]
rs57912119	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59059860	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59234651	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6470298	1.00[EUR][1000 genomes]
rs6470300	1.00[EUR][1000 genomes]
rs6470302	0.90[EUR][1000 genomes]
rs6470303	1.00[EUR][1000 genomes]
rs6470305	1.00[EUR][1000 genomes]
rs6470306	0.85[EUR][1000 genomes]
rs6470307	1.00[EUR][1000 genomes]
rs6470308	1.00[EUR][1000 genomes]
rs6470311	1.00[EUR][1000 genomes]
rs67108254	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67153029	0.90[EUR][1000 genomes]
rs67698519	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6989386	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6996164	0.95[ASN][1000 genomes]
rs7017632	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72718716	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72718730	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7387480	1.00[EUR][1000 genomes]
rs7387482	1.00[EUR][1000 genomes]
rs7461227	1.00[EUR][1000 genomes]
rs7461393	1.00[EUR][1000 genomes]
rs7462143	1.00[EUR][1000 genomes]
rs7462178	1.00[EUR][1000 genomes]
rs7463173	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7463222	1.00[EUR][1000 genomes]
rs7464577	1.00[EUR][1000 genomes]
rs7464782	1.00[EUR][1000 genomes]
rs7465413	1.00[EUR][1000 genomes]
rs7827416	0.90[EUR][1000 genomes]
rs9694845	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125900000-125901600	Enhancers	K562	blood
2	chr8:125900000-125903200	Enhancers	HMEC	breast
3	chr8:125900200-125901600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:125900200-125902400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:125900200-125902400	Enhancers	NHEK	skin
6	chr8:125900200-125902600	Enhancers	Esophagus	oesophagus
7	chr8:125900200-125903000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:125900200-125903200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:125900400-125901800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:125900600-125903200	Weak transcription	Right Atrium	heart
11	chr8:125901000-125902200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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