Variant report

Variant	rs67153029
Chromosome Location	chr8:125885530-125885531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125879365..125882872-chr8:125883741..125886693,4	MCF-7	breast:
2	chr8:125885238..125886912-chr8:125890382..125892259,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10109611	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12549398	0.90[EUR][1000 genomes]
rs12549495	0.90[EUR][1000 genomes]
rs12680676	0.93[AFR][1000 genomes]
rs13282088	0.81[AFR][1000 genomes]
rs13282814	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs28416206	0.90[EUR][1000 genomes]
rs28513518	0.90[EUR][1000 genomes]
rs28806495	0.90[EUR][1000 genomes]
rs57912119	0.90[EUR][1000 genomes]
rs59059860	0.90[EUR][1000 genomes]
rs59234651	0.90[EUR][1000 genomes]
rs6470298	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6470300	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6470302	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6470303	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6470305	0.90[EUR][1000 genomes]
rs6470307	0.90[EUR][1000 genomes]
rs6470308	0.90[EUR][1000 genomes]
rs6470311	0.90[EUR][1000 genomes]
rs67108254	0.90[EUR][1000 genomes]
rs67698519	0.90[EUR][1000 genomes]
rs6989386	0.90[EUR][1000 genomes]
rs7017632	0.90[EUR][1000 genomes]
rs72718716	0.90[EUR][1000 genomes]
rs72718730	0.90[EUR][1000 genomes]
rs7387480	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7387482	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7461227	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7461393	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7462143	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7462178	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7463173	0.90[EUR][1000 genomes]
rs7463222	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7464577	0.90[EUR][1000 genomes]
rs7464782	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7465413	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7827416	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9693629	0.81[AFR][1000 genomes]
rs9694845	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9694858	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125882600-125886400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:125884400-125885600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:125884400-125885600	Enhancers	NHDF-Ad	bronchial
4	chr8:125884600-125885600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:125884600-125885600	Enhancers	NHLF	lung
6	chr8:125885000-125885600	Enhancers	Brain Germinal Matrix	brain
7	chr8:125885200-125885600	Enhancers	Colon Smooth Muscle	Colon
8	chr8:125885200-125885600	Enhancers	Esophagus	oesophagus
9	chr8:125885200-125885600	Enhancers	Fetal Brain Male	brain
10	chr8:125885400-125885600	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links