Variant report

Variant	rs28807996
Chromosome Location	chr2:184161778-184161779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1037968	1.00[EUR][1000 genomes]
rs11884352	1.00[EUR][1000 genomes]
rs11887082	1.00[EUR][1000 genomes]
rs11889321	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11890612	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11890957	1.00[EUR][1000 genomes]
rs11898922	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11899136	1.00[EUR][1000 genomes]
rs11900146	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11904544	1.00[EUR][1000 genomes]
rs1462522	1.00[EUR][1000 genomes]
rs1462523	1.00[EUR][1000 genomes]
rs16823994	1.00[EUR][1000 genomes]
rs16824047	1.00[EUR][1000 genomes]
rs16824100	1.00[EUR][1000 genomes]
rs16824103	1.00[EUR][1000 genomes]
rs16824136	1.00[EUR][1000 genomes]
rs16824139	1.00[EUR][1000 genomes]
rs16824141	1.00[EUR][1000 genomes]
rs16824239	1.00[EUR][1000 genomes]
rs16824259	1.00[EUR][1000 genomes]
rs2045760	1.00[EUR][1000 genomes]
rs2061657	1.00[EUR][1000 genomes]
rs2368356	1.00[EUR][1000 genomes]
rs2368374	1.00[EUR][1000 genomes]
rs34386785	1.00[EUR][1000 genomes]
rs55985024	1.00[EUR][1000 genomes]
rs56088806	1.00[EUR][1000 genomes]
rs56987972	1.00[EUR][1000 genomes]
rs57022552	1.00[EUR][1000 genomes]
rs58726290	1.00[EUR][1000 genomes]
rs58782215	1.00[EUR][1000 genomes]
rs59648361	1.00[EUR][1000 genomes]
rs60159376	1.00[EUR][1000 genomes]
rs60835883	1.00[EUR][1000 genomes]
rs60857445	1.00[EUR][1000 genomes]
rs61190837	1.00[EUR][1000 genomes]
rs61212352	1.00[EUR][1000 genomes]
rs6434010	1.00[EUR][1000 genomes]
rs6751386	1.00[EUR][1000 genomes]
rs6756380	1.00[EUR][1000 genomes]
rs6759272	1.00[EUR][1000 genomes]
rs73040916	1.00[EUR][1000 genomes]
rs73042731	1.00[EUR][1000 genomes]
rs73042751	1.00[EUR][1000 genomes]
rs73042792	1.00[EUR][1000 genomes]
rs73044730	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73050584	0.91[AFR][1000 genomes]
rs73050586	0.91[AFR][1000 genomes]
rs73050588	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73050593	1.00[EUR][1000 genomes]
rs73050598	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7584986	1.00[EUR][1000 genomes]
rs898947	1.00[EUR][1000 genomes]
rs955597	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1014807	chr2:184123737-184181052	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184157200-184180200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:184160400-184165600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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