Variant report

Variant	rs73050598
Chromosome Location	chr2:184181294-184181295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1037968	1.00[EUR][1000 genomes]
rs11884352	1.00[EUR][1000 genomes]
rs11887082	1.00[EUR][1000 genomes]
rs11889321	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11890612	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11890957	1.00[EUR][1000 genomes]
rs11898922	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11899136	1.00[EUR][1000 genomes]
rs11900146	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1462522	1.00[EUR][1000 genomes]
rs1462523	1.00[EUR][1000 genomes]
rs16824047	1.00[EUR][1000 genomes]
rs16824100	1.00[EUR][1000 genomes]
rs16824103	1.00[EUR][1000 genomes]
rs16824136	1.00[EUR][1000 genomes]
rs16824139	1.00[EUR][1000 genomes]
rs16824141	1.00[EUR][1000 genomes]
rs16824239	1.00[EUR][1000 genomes]
rs16824259	1.00[EUR][1000 genomes]
rs2045760	1.00[EUR][1000 genomes]
rs2061657	1.00[EUR][1000 genomes]
rs2368356	1.00[EUR][1000 genomes]
rs2368374	1.00[EUR][1000 genomes]
rs28807996	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34386785	1.00[EUR][1000 genomes]
rs55985024	1.00[EUR][1000 genomes]
rs56088806	1.00[EUR][1000 genomes]
rs56987972	1.00[EUR][1000 genomes]
rs57022552	1.00[EUR][1000 genomes]
rs58726290	1.00[EUR][1000 genomes]
rs58782215	1.00[EUR][1000 genomes]
rs59648361	1.00[EUR][1000 genomes]
rs60159376	1.00[EUR][1000 genomes]
rs60835883	1.00[EUR][1000 genomes]
rs60857445	1.00[EUR][1000 genomes]
rs61190837	1.00[EUR][1000 genomes]
rs61212352	1.00[EUR][1000 genomes]
rs6434010	1.00[EUR][1000 genomes]
rs6751386	1.00[EUR][1000 genomes]
rs6756380	1.00[EUR][1000 genomes]
rs6759272	1.00[EUR][1000 genomes]
rs73040916	1.00[EUR][1000 genomes]
rs73042731	1.00[EUR][1000 genomes]
rs73042751	1.00[EUR][1000 genomes]
rs73042792	1.00[EUR][1000 genomes]
rs73044730	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73050584	0.81[AFR][1000 genomes]
rs73050586	0.81[AFR][1000 genomes]
rs73050588	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73050593	1.00[EUR][1000 genomes]
rs7584986	1.00[EUR][1000 genomes]
rs898947	1.00[EUR][1000 genomes]
rs955597	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184178600-184181400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:184179600-184181600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:184179800-184182200	Enhancers	NHEK	skin
4	chr2:184180000-184181600	Enhancers	NH-A	brain
5	chr2:184180200-184181400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:184180200-184181400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:184180200-184181400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:184180200-184181400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:184180200-184181400	Enhancers	HMEC	breast
10	chr2:184180200-184181400	Enhancers	HSMMtube	muscle
11	chr2:184180200-184181400	Enhancers	Osteobl	bone
12	chr2:184180600-184181400	Enhancers	NHDF-Ad	bronchial
13	chr2:184180800-184181400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:184180800-184181600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:184180800-184182000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:184181000-184181600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:184181000-184181600	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links