Variant report

Variant	rs2881920
Chromosome Location	chr7:47820170-47820171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47810003..47811923-chr7:47819425..47821850,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12536897	0.81[ASN][1000 genomes]
rs1597936	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1869321	0.89[ASN][1000 genomes]
rs2348461	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4295569	0.90[ASN][1000 genomes]
rs4339543	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4481491	0.90[ASN][1000 genomes]
rs6953528	0.89[ASN][1000 genomes]
rs6961895	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7797545	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1015163	chr7:47734913-47832389	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv538831	chr7:47734913-47832389	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv830990	chr7:47767540-47837584	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47814400-47823200	Enhancers	HepG2	liver
2	chr7:47815000-47821600	Weak transcription	Aorta	Aorta
3	chr7:47815800-47821600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:47815800-47821600	Weak transcription	NHLF	lung
5	chr7:47816200-47826000	Weak transcription	Right Atrium	heart
6	chr7:47816400-47821400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:47817200-47846600	Weak transcription	Left Ventricle	heart
8	chr7:47817800-47821600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:47817800-47824600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:47818000-47821600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:47818000-47821600	Weak transcription	NH-A	brain
12	chr7:47818400-47822400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:47818600-47821600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:47818600-47821800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:47819000-47821600	Weak transcription	HMEC	breast
16	chr7:47819000-47821800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:47819000-47822000	Weak transcription	NHEK	skin
18	chr7:47819000-47826600	Weak transcription	Small Intestine	intestine
19	chr7:47819200-47821400	Weak transcription	HSMM	muscle
20	chr7:47819200-47821800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:47819400-47821400	Weak transcription	HSMMtube	muscle
22	chr7:47819400-47821600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:47819400-47821600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr7:47819400-47821600	Weak transcription	Osteobl	bone
25	chr7:47819400-47822400	Weak transcription	Fetal Intestine Large	intestine
26	chr7:47819400-47823200	Weak transcription	Fetal Intestine Small	intestine
27	chr7:47819600-47821600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:47819800-47820200	Weak transcription	A549	lung
29	chr7:47820000-47826000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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