Variant report

Variant	rs7797545
Chromosome Location	chr7:47823298-47823299
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:47817549..47819162-chr7:47820902..47823876,2	MCF-7	breast:
2	chr7:47672522..47676333-chr7:47822222..47824169,3	MCF-7	breast:
3	chr7:47620215..47623501-chr7:47821573..47827272,7	MCF-7	breast:
4	chr7:47615873..47619377-chr7:47823257..47826592,4	MCF-7	breast:
5	chr7:47673413..47676550-chr7:47822059..47827530,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136205	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12536897	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs1597936	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1869321	0.90[ASN][1000 genomes]
rs2348461	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2881920	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4295569	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4339543	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4481491	0.89[ASN][1000 genomes]
rs6953528	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs6961895	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1015163	chr7:47734913-47832389	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv538831	chr7:47734913-47832389	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv830990	chr7:47767540-47837584	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47816200-47826000	Weak transcription	Right Atrium	heart
2	chr7:47817200-47846600	Weak transcription	Left Ventricle	heart
3	chr7:47817800-47824600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:47819000-47826600	Weak transcription	Small Intestine	intestine
5	chr7:47820000-47826000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:47821400-47827000	Enhancers	HSMMtube	muscle
7	chr7:47821400-47827600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:47821400-47827600	Enhancers	HSMM	muscle
9	chr7:47821600-47823400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr7:47821600-47823600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:47821600-47823600	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr7:47821600-47823600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr7:47821600-47827200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:47821600-47827200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:47821600-47827200	Enhancers	Rectal Smooth Muscle	rectum
16	chr7:47821600-47827200	Enhancers	NHDF-Ad	bronchial
17	chr7:47821600-47827600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:47821600-47827600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:47821600-47827600	Enhancers	Osteobl	bone
20	chr7:47821600-47827800	Enhancers	HMEC	breast
21	chr7:47821800-47825800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:47822000-47823400	Enhancers	NHEK	skin
23	chr7:47822000-47824400	Weak transcription	Placenta	Placenta
24	chr7:47822000-47825000	Weak transcription	Aorta	Aorta
25	chr7:47822200-47827400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:47822400-47824600	Weak transcription	Fetal Kidney	kidney
27	chr7:47822400-47827600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:47822600-47823400	Enhancers	Pancreas	Pancrea
29	chr7:47823000-47823400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:47823000-47823600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:47823000-47823600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr7:47823000-47823600	Enhancers	Fetal Intestine Large	intestine
33	chr7:47823000-47823800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:47823000-47827600	Enhancers	Fetal Stomach	stomach
35	chr7:47823200-47823400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:47823200-47823400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:47823200-47823400	Enhancers	Ovary	ovary
38	chr7:47823200-47823400	Enhancers	Placenta Amnion	Placenta Amnion
39	chr7:47823200-47823400	Enhancers	Psoas Muscle	Psoas
40	chr7:47823200-47823400	Enhancers	Right Ventricle	heart
41	chr7:47823200-47823400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr7:47823200-47823400	Flanking Active TSS	Stomach Smooth Muscle	stomach
43	chr7:47823200-47823600	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr7:47823200-47823600	Flanking Active TSS	Colon Smooth Muscle	Colon
45	chr7:47823200-47823600	Enhancers	Fetal Intestine Small	intestine
46	chr7:47823200-47823600	Flanking Active TSS	Hela-S3	cervix
47	chr7:47823200-47823600	Flanking Active TSS	HUVEC	blood vessel
48	chr7:47823200-47823600	Flanking Active TSS	NH-A	brain
49	chr7:47823200-47823600	Flanking Active TSS	NHLF	lung
50	chr7:47823200-47823800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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