Variant report

Variant	rs288194
Chromosome Location	chr5:107318454-107318455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11744308	0.81[CHB][hapmap]
rs17165766	0.81[CHB][hapmap]
rs172305	0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.87[LWK][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107309000-107318800	Weak transcription	Left Ventricle	heart
4	chr5:107313800-107318600	Weak transcription	Stomach Mucosa	stomach
5	chr5:107313800-107321000	Weak transcription	Lung	lung
6	chr5:107314400-107320400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:107314600-107320800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:107316000-107327000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr5:107316200-107320000	Weak transcription	Dnd41	blood
10	chr5:107317400-107318600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr5:107317400-107318800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr5:107318400-107318600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:107318400-107319600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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