Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10793832	0.94[EUR][1000 genomes]
rs10900900	1.00[CEU][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10900901	0.90[EUR][1000 genomes]
rs11242655	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs11242656	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs11744774	0.91[EUR][1000 genomes]
rs12513714	0.90[EUR][1000 genomes]
rs12514413	0.80[CEU][hapmap]
rs12514858	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs12521275	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13182107	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17160784	0.95[JPT][hapmap]
rs17165766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17371964	0.80[CEU][hapmap]
rs17438698	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs1897803	1.00[CEU][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes]
rs288194	0.81[CHB][hapmap]
rs35523405	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4144479	0.81[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs4307079	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4568347	0.85[ASN][1000 genomes]
rs885624	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9328028	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302200-107310400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:107302400-107313800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:107304200-107314200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:107305000-107313400	Weak transcription	Gastric	stomach
7	chr5:107305400-107313600	Weak transcription	NHEK	skin
8	chr5:107307000-107310600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:107308400-107315400	Weak transcription	Fetal Lung	lung
10	chr5:107309000-107314000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr5:107309000-107318800	Weak transcription	Left Ventricle	heart
12	chr5:107309400-107312400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:107309400-107312800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:107309600-107312400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr5:107309800-107310400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:107310000-107312800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:107310000-107313600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:107310200-107312400	Enhancers	HUES6 Cell Line	embryonic stem cell

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